Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YNL112W
Length:
546
Number of sequences:
5887
Description:
YNL112W DBP2 SGDID:S000005056, Chr XIV from 413639-414911,415914-416281, Genome Release 64-1-1, Verified ORF, "Essential ATP-dependent RNA helicase of the DEAD-box protein family, involved in nonsense-mediated mRNA decay and rRNA processing"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
991A2XVF7    832   RH13_ORYSI DEAD-box ATP-dependent RNA helicas...4394e-37     150     28     46
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
992Q4HVW2    637   SPB4_GIBZE ATP-dependent rRNA helicase SPB4 O...3844e-37     148     28     50GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
993Q54EC2    663   DDX55_DICDI Probable ATP-dependent RNA helica...4444e-37     149     28     45GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
994Q6C835    799   DBP7_YARLI ATP-dependent RNA helicase DBP7 OS...4155e-37     149     30     45GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
995A7TPC9    597   DBP9_VANPO ATP-dependent RNA helicase DBP9 OS...4135e-37     148     28     46GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
996Q9VNV3    727   DDX1_DROME ATP-dependent RNA helicase Ddx1 OS...590.026     41.2     36     54GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; ISS:UniProtKB.::GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0033677; F:DNA/RNA helicase activity; ISS:UniProtKB.::GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.::GO:0003712; F:transcription cofactor activity; ISS:UniProtKB.
GO:0032508; P:DNA duplex unwinding; ISS:UniProtKB.::GO:0006302; P:double-strand break repair; ISS:UniProtKB.::GO:0001700; P:embryonic development via the syncytial blastoderm; IEP:UniProtKB.::GO:0042254; P:ribosome biogenesis; ISS:FlyBase.
997A5E2I8    637   SPB4_LODEL ATP-dependent rRNA helicase SPB4 O...3845e-37     148     27     49GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
998Q6BSM3    614   SPB4_DEBHA ATP-dependent rRNA helicase SPB4 O...3786e-37     148     29     48GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
999Q641Y8    740   DDX1_RAT ATP-dependent RNA helicase DDX1 OS=R...610.078     39.7     34     52GO:0071920; C:cleavage body; ISS:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0072669; C:tRNA-splicing ligase complex; ISS:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; ISS:UniProtKB.::GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0033677; F:DNA/RNA helicase activity; ISS:UniProtKB.::GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.::GO:0003712; F:transcription cofactor activity; ISS:UniProtKB.
GO:0032508; P:DNA duplex unwinding; ISS:UniProtKB.::GO:0006302; P:double-strand break repair; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
1000Q93ZG7    496   RH38_ARATH DEAD-box ATP-dependent RNA helicas...3609e-37     146     31     48GO:0005737; C:cytoplasm; IDA:TAIR.::GO:0005635; C:nuclear envelope; IDA:TAIR.::GO:0005886; C:plasma membrane; IDA:TAIR.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008186; F:RNA-dependent ATPase activity; IDA:TAIR.
GO:0016973; P:poly(A)+ mRNA export from nucleus; IDA:TAIR.::GO:0009737; P:response to abscisic acid stimulus; IMP:TAIR.::GO:0009409; P:response to cold; IMP:TAIR.::GO:0009408; P:response to heat; IMP:TAIR.
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