Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YNL075W
Length:
290
Number of sequences:
5887
Description:
YNL075W IMP4 SGDID:S000005019, Chr XIV from 485607-486479, Genome Release 64-1-1, Verified ORF, "Component of the SSU processome, which is required for pre-18S rRNA processing; interacts with Mpp10p; member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P53941    290   IMP4_YEAST U3 small nucleolar ribonucleoprote...2900     602     100     100GO:0034457; C:Mpp10 complex; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0042134; F:rRNA primary transcript binding; IPI:SGD.::GO:0043047; F:single-stranded telomeric DNA binding; IDA:SGD.::GO:0030515; F:snoRNA binding; IDA:SGD.
GO:0006364; P:rRNA processing; TAS:SGD.
2Q6FNN7    288   IMP4_CANGA U3 small nucleolar ribonucleoprote...2901e-178     501     86     94GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
3Q755T8    283   IMP4_ASHGO U3 small nucleolar ribonucleoprote...2906e-171     481     81     92GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
4Q6C804    283   IMP4_YARLI U3 small nucleolar ribonucleoprote...2904e-159     452     72     87GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
5Q6BYD9    284   IMP4_DEBHA U3 small nucleolar ribonucleoprote...2902e-143     412     65     83GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
6O13823    289   IMP4_SCHPO U3 small nucleolar ribonucleoprote...2913e-106     317     53     74GO:0005730; C:nucleolus; IDA:PomBase.::GO:0032040; C:small-subunit processome; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006364; P:rRNA processing; ISS:PomBase.
7Q5PQR5    291   IMP4_RAT U3 small nucleolar ribonucleoprotein...2829e-91     278     51     69GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
8Q8VHZ7    291   IMP4_MOUSE U3 small nucleolar ribonucleoprote...2829e-91     278     51     69GO:0005730; C:nucleolus; ISS:HGNC.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; TAS:MGI.
9Q0VD01    291   IMP4_BOVIN U3 small nucleolar ribonucleoprote...2828e-90     275     51     68GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
10Q96G21    291   IMP4_HUMAN U3 small nucleolar ribonucleoprote...2822e-89     275     51     68GO:0005730; C:nucleolus; IDA:HGNC.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:HGNC.
GO:0006364; P:rRNA processing; NAS:HGNC.
11Q5R947    291   IMP4_PONAB U3 small nucleolar ribonucleoprote...2822e-89     275     51     68GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
12O62518    292   YHPK_CAEEL Brix domain-containing protein ZK7...2963e-83     259     46     65
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.
13Q9VKB4    394   RPF1_DROME Probable ribosome production facto...2093e-34     133     34     57GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
14Q6IQU6    330   RPF1_DANRE Ribosome production factor 1 OS=Da...2431e-33     130     32     53GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
15P54073    384   YUY1_CAEEL Brix domain-containing protein F44...1961e-33     131     34     54
GO:0040007; P:growth; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.
16Q8AVP1    343   RPF1_XENLA Ribosome production factor 1 OS=Xe...2462e-33     130     32     53GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
17Q5R631    349   RPF1_PONAB Ribosome production factor 1 OS=Po...2443e-33     129     32     53GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
18Q9H9Y2    349   RPF1_HUMAN Ribosome production factor 1 OS=Ho...2443e-33     129     32     53GO:0005730; C:nucleolus; IDA:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
19Q7TND5    349   RPF1_MOUSE Ribosome production factor 1 OS=Mu...2445e-32     126     32     53GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
20Q5RJS9    345   RPF1_RAT Ribosome production factor 1 OS=Ratt...2445e-32     126     32     53GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
21O14180    306   YDS4_SCHPO Brix domain-containing protein C4F...2302e-31     124     34     54GO:0005730; C:nucleolus; IDA:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.
GO:0042134; F:rRNA primary transcript binding; ISS:PomBase.
GO:0000466; P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0000027; P:ribosomal large subunit assembly; ISS:PomBase.
22P38805    295   RPF1_YEAST Ribosome production factor 1 OS=Sa...2377e-27     110     31     50GO:0005730; C:nucleolus; IDA:SGD.::GO:0030687; C:preribosome, large subunit precursor; IDA:SGD.
GO:0042134; F:rRNA primary transcript binding; IPI:SGD.
GO:0000466; P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000027; P:ribosomal large subunit assembly; IPI:SGD.::GO:0000055; P:ribosomal large subunit export from nucleus; IMP:SGD.
23Q9YC08    180   BRIX_AERPE Probable brix domain-containing ri...650.00002     47.8     37     51
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
24Q9DCA5    353   BRX1_MOUSE Ribosome biogenesis protein BRX1 h...2440.0003     45.4     21     41GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
25P34524    352   BRX1_CAEEL Ribosome biogenesis protein BRX1 h...1980.0003     45.4     25     42GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0007276; P:gamete generation; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
26Q3SZZ0    353   BRX1_BOVIN Ribosome biogenesis protein BRX1 h...2200.0004     45.1     22     43GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
27Q8TDN6    353   BRX1_HUMAN Ribosome biogenesis protein BRX1 h...2200.0005     44.7     22     43GO:0005730; C:nucleolus; IDA:HPA.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
28Q4QQT6    352   BRX1_RAT Ribosome biogenesis protein BRX1 hom...2150.001     43.9     21     43GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
29Q5RAN2    353   BRX1_PONAB Ribosome biogenesis protein BRX1 h...1910.002     43.1     21     45GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
30Q8TZI2    223   BRIX_PYRFU Probable brix domain-containing ri...920.003     41.6     26     50
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
31Q5JDM5    208   BRIX_PYRKO Probable brix domain-containing ri...920.004     41.2     24     49
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
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