Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YNL016W
Length:
453
Number of sequences:
5887
Description:
YNL016W PUB1 SGDID:S000004961, Chr XIV from 602907-604268, Genome Release 64-1-1, Verified ORF, "Poly (A)+ RNA-binding protein, abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
931P43332    216   SNRPA_DROME U1 small nuclear ribonucleoprotei...426     32.3     33     55GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0043234; C:protein complex; IPI:FlyBase.::GO:0005685; C:U1 snRNP; ISS:FlyBase.::GO:0005686; C:U2 snRNP; ISS:FlyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0035614; F:snRNA stem-loop binding; IDA:FlyBase.::GO:0030619; F:U1 snRNA binding; IDA:FlyBase.::GO:0030620; F:U2 snRNA binding; IDA:FlyBase.
GO:0019099; P:female germ-line sex determination; NAS:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.::GO:0048477; P:oogenesis; IMP:FlyBase.::GO:0007539; P:primary sex determination, soma; NAS:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
932Q02427    144   RBP1_DROME RNA-binding protein 1 OS=Drosophil...636.1     32     29     52GO:0005634; C:nucleus; IDA:FlyBase.::GO:0035327; C:transcriptionally active chromatin; IDA:FlyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006376; P:mRNA splice site selection; ISS:FlyBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IDA:FlyBase.
933Q6CQM2    425   RRT5_KLULA Regulator of rDNA transcription pr...686.1     32.7     29     49
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
934P59708    125   PM14_MOUSE Pre-mRNA branch site protein p14 O...1076.5     31.6     26     42
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
935Q9Y3B4    125   PM14_HUMAN Pre-mRNA branch site protein p14 O...1076.5     31.6     26     42GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.
936Q9Y7R4    920   SET1_SCHPO Histone-lysine N-methyltransferase...1076.7     33.1     22     42GO:0005737; C:cytoplasm; IDA:PomBase.::GO:0000790; C:nuclear chromatin; NAS:PomBase.::GO:0048188; C:Set1C/COMPASS complex; IDA:PomBase.
GO:0042800; F:histone methyltransferase activity (H3-K4 specific); TAS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006338; P:chromatin remodeling; ISS:PomBase.::GO:0000077; P:DNA damage checkpoint; IGI:PomBase.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0000723; P:telomere maintenance; IMP:PomBase.
937Q2T0N2    213   KYNB_BURTA Kynurenine formamidase OS=CIP 1063...966.7     32.3     26     45
GO:0004061; F:arylformamidase activity; ISS:UniProtKB.::GO:0004328; F:formamidase activity; IEA:InterPro.
GO:0043420; P:anthranilate metabolic process; ISS:UniProtKB.::GO:0019441; P:tryptophan catabolic process to kynurenine; ISS:UniProtKB.
938B4MQL8    690   EIF3B_DROWI Eukaryotic translation initiation...547.1     32.7     28     50GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.
939Q8R0Z2    598   ENOX2_MOUSE Ecto-NOX disulfide-thiol exchange...507.9     32.7     28     52GO:0009897; C:external side of plasma membrane; ISS:UniProtKB.::GO:0005615; C:extracellular space; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0015035; F:protein disulfide oxidoreductase activity; ISS:UniProtKB.
GO:0022900; P:electron transport chain; IEA:UniProtKB-KW.::GO:0040008; P:regulation of growth; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.::GO:0007624; P:ultradian rhythm; ISS:UniProtKB.
940Q16206    610   ENOX2_HUMAN Ecto-NOX disulfide-thiol exchange...508.3     32.7     28     52GO:0005829; C:cytosol; TAS:ProtInc.::GO:0009897; C:external side of plasma membrane; IDA:UniProtKB.::GO:0005615; C:extracellular space; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0015035; F:protein disulfide oxidoreductase activity; IDA:UniProtKB.
GO:0016049; P:cell growth; NAS:UniProtKB.::GO:0022900; P:electron transport chain; IEA:UniProtKB-KW.::GO:0040008; P:regulation of growth; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.::GO:0007624; P:ultradian rhythm; IDA:UniProtKB.
941Q8CGX0    577   IF2B1_RAT Insulin-like growth factor 2 mRNA-b...1628.7     32.3     20     43GO:0070937; C:CRD-mediated mRNA stability complex; ISS:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0043197; C:dendritic spine; IEA:UniProtKB-SubCell.::GO:0030027; C:lamellipodium; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0010610; P:regulation of mRNA stability involved in response to stress; ISS:UniProtKB.::GO:0006403; P:RNA localization; IMP:RGD.
942Q9NZI8    577   IF2B1_HUMAN Insulin-like growth factor 2 mRNA...1628.7     32.3     20     43GO:0070937; C:CRD-mediated mRNA stability complex; IDA:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0043197; C:dendritic spine; IEA:UniProtKB-SubCell.::GO:0030027; C:lamellipodium; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:HPA.::GO:0005886; C:plasma membrane; IDA:HPA.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0048027; F:mRNA 5'-UTR binding; IDA:BHF-UCL.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0045182; F:translation regulator activity; IDA:BHF-UCL.
GO:0070934; P:CRD-mediated mRNA stabilization; IDA:UniProtKB.::GO:0017148; P:negative regulation of translation; IDA:BHF-UCL.::GO:0042035; P:regulation of cytokine biosynthetic process; IC:BHF-UCL.::GO:0010610; P:regulation of mRNA stability involved in response to stress; IMP:UniProtKB.
943O88477    577   IF2B1_MOUSE Insulin-like growth factor 2 mRNA...1629.2     32.3     20     43GO:0070937; C:CRD-mediated mRNA stability complex; ISS:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0010610; P:regulation of mRNA stability involved in response to stress; ISS:UniProtKB.
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