Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YNL004W
Length:
454
Number of sequences:
5887
Description:
YNL004W HRB1 SGDID:S000004949, Chr XIV from 622915-622944,623287-624621, Genome Release 64-1-1, Verified ORF, "Poly(A+) RNA-binding protein, involved in the export of mRNAs from the nucleus to the cytoplasm; similar to Gbp2p and Npl3p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
121O94432    474   YHKF_SCHPO Uncharacterized RNA-binding protei...1750.000003     52.8     25     46GO:0005737; C:cytoplasm; ISS:PomBase.::GO:0005849; C:mRNA cleavage factor complex; ISS:PomBase.
GO:0003730; F:mRNA 3'-UTR binding; NAS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0006378; P:mRNA polyadenylation; ISS:PomBase.
122Q54PB2    895   MRD1_DICDI Multiple RNA-binding domain-contai...549.7     32.3     39     56GO:0005730; C:nucleolus; ISS:dictyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030515; F:snoRNA binding; ISS:dictyBase.
GO:0006364; P:rRNA processing; ISS:dictyBase.
123P52912    386   TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus ...1680.0003     46.6     26     43
124P31483    386   TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=H...1680.0002     47     26     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; TAS:ProtInc.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006917; P:induction of apoptosis; TAS:ProtInc.::GO:0048024; P:regulation of nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.
125Q28FX0    343   ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tr...713.5     33.5     30     48GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.
126Q60900    367   ELAV3_MOUSE ELAV-like protein 3 OS=Mus muscul...716.7     32.7     30     46
GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.
127Q5ZML3    257   SRSF1_CHICK Serine/arginine-rich splicing fac...730.84     35.4     29     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
128O13845    603   RSD1_SCHPO RNA-binding protein rsd1 OS=Schizo...711.7     34.7     23     48GO:0005681; C:spliceosomal complex; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
129Q5R9Z6    359   ELAV2_PONAB ELAV-like protein 2 OS=Pongo abel...717.5     32.7     30     48
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
130Q12926    359   ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapie...717.5     32.7     30     48
GO:0003730; F:mRNA 3'-UTR binding; TAS:ProtInc.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006355; P:regulation of transcription, DNA-dependent; TAS:ProtInc.
131Q9FPJ8    387   RB45A_ARATH Polyadenylate-binding protein RBP...3070.000005     52     23     38GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
132Q8R3C6    952   RBM19_MOUSE Probable RNA-binding protein 19 O...750.069     39.3     33     51GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0040019; P:positive regulation of embryonic development; IMP:UniProtKB.
133Q5R7H2    248   SRSF1_PONAB Serine/arginine-rich splicing fac...703.3     33.5     29     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
134Q3YLA6    248   SRSF1_PIG Serine/arginine-rich splicing facto...703.3     33.5     29     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
135Q6PDM2    248   SRSF1_MOUSE Serine/arginine-rich splicing fac...703.3     33.5     29     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0050733; F:RS domain binding; IPI:MGI.
GO:0001701; P:in utero embryonic development; IMP:MGI.::GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
136Q07955    248   SRSF1_HUMAN Serine/arginine-rich splicing fac...703.3     33.5     29     46GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0000395; P:nuclear mRNA 5'-splice site recognition; IDA:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
137Q0VCY7    248   SRSF1_BOVIN Serine/arginine-rich splicing fac...703.3     33.5     29     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
138Q60899    360   ELAV2_MOUSE ELAV-like protein 2 OS=Mus muscul...717.4     32.7     30     48
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
139Q01560    414   NOP3_YEAST Nucleolar protein 3 OS=Saccharomyc...1760.000007     51.6     24     39GO:0005737; C:cytoplasm; IMP:SGD.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0031370; F:eukaryotic initiation factor 4G binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:SGD.::GO:0000993; F:RNA polymerase II core binding; IPI:SGD.
GO:0006406; P:mRNA export from nucleus; IGI:SGD.::GO:2000805; P:negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled; IDA:SGD.::GO:0017148; P:negative regulation of translation; IDA:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IDA:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0006415; P:translational termination; IMP:SGD.
140Q96EP5    407   DAZP1_HUMAN DAZ-associated protein 1 OS=Homo ...820.057     39.3     29     50GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005634; C:nucleus; IDA:HPA.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; TAS:ProtInc.
141Q15020    963   SART3_HUMAN Squamous cell carcinoma antigen r...960.0008     45.4     28     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
142Q3SWU3    322   HNRDL_RAT Heterogeneous nuclear ribonucleopro...1370.000009     51.2     26     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
143Q44560    102   RBPA_NOSS1 Putative RNA-binding protein rbpA ...780.000009     48.5     38     55
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
144Q8CH84    359   ELAV2_RAT ELAV-like protein 2 OS=Rattus norve...717     32.7     30     48
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
145Q5REG1    981   SART3_PONAB Squamous cell carcinoma antigen r...960.0009     45.4     28     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
146O22315    303   SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=A...770.003     43.5     31     51GO:0035061; C:interchromatin granule; IDA:TAIR.::GO:0016607; C:nuclear speck; IDA:TAIR.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
147P27476    414   NSR1_YEAST Nuclear localization sequence-bind...1890.005     42.7     24     44GO:0005739; C:mitochondrion; IDA:SGD.::GO:0005730; C:nucleolus; TAS:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:SGD.::GO:0003697; F:single-stranded DNA binding; IDA:SGD.
GO:0006950; P:response to stress; IEA:UniProtKB-KW.::GO:0000028; P:ribosomal small subunit assembly; TAS:SGD.::GO:0006364; P:rRNA processing; TAS:SGD.
148Q7XTT4    707   NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp...1900.00002     50.4     30     45
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.
149Q9FVQ1    557   NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thalia...1870.00002     50.4     28     49GO:0005730; C:nucleolus; IDA:TAIR.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0010588; P:cotyledon vascular tissue pattern formation; IMP:TAIR.::GO:0000478; P:endonucleolytic cleavage involved in rRNA processing; IMP:TAIR.::GO:0048366; P:leaf development; IMP:TAIR.::GO:0010305; P:leaf vascular tissue pattern formation; IMP:TAIR.::GO:0080056; P:petal vascular tissue pattern formation; IMP:TAIR.::GO:0048364; P:root development; IMP:TAIR.::GO:0080057; P:sepal vascular tissue pattern formation; IMP:TAIR.
150P09405    707   NUCL_MOUSE Nucleolin OS=Mus musculus (Mouse)....590.68     36.2     39     54GO:0005730; C:nucleolus; IDA:MGI.::GO:0005654; C:nucleoplasm; IDA:MGI.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0042162; F:telomeric DNA binding; ISS:UniProtKB.
151O14327    166   PAB2_SCHPO Polyadenylate-binding protein 2 OS...750.00003     47.8     32     53GO:0005634; C:nucleus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:PomBase.::GO:0005515; F:protein binding; IPI:PomBase.
GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IMP:PomBase.
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