Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR288W
Length:
971
Number of sequences:
5887
Description:
YMR288W HSH155 SGDID:S000004901, Chr XIII from 845571-848486, Genome Release 64-1-1, Verified ORF, "U2-snRNP associated splicing factor that forms extensive associations with the branch site-3' splice site-3' exon region upon prespliceosome formation; similarity to the mammalian U2 snRNP-associated splicing factor SAP155"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P49955    971   SF3B1_YEAST U2 snRNP component HSH155 OS=Sacc...9710     2012     100     100GO:0005686; C:U2 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0003729; F:mRNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0000245; P:spliceosomal complex assembly; IPI:SGD.
2Q10178    1205   SF3B1_SCHPO U2 snRNP component prp10 OS=Schiz...690.21     39.3     28     51GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0005686; C:U2 snRNP; ISS:PomBase.
GO:0003729; F:mRNA binding; ISS:PomBase.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IMP:PomBase.::GO:0000245; P:spliceosomal complex assembly; ISS:PomBase.
3O75533    1304   SF3B1_HUMAN Splicing factor 3B subunit 1 OS=H...8490     930     53     70GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB.
4Q99NB9    1304   SF3B1_MOUSE Splicing factor 3B subunit 1 OS=M...8490     929     53     70GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
5O57683    1307   SF3B1_XENLA Splicing factor 3B subunit 1 OS=X...8420     927     54     70GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6Q92616    2671   GCN1L_HUMAN Translational activator GCN1 OS=H...4880.0002     49.7     23     39GO:0005840; C:ribosome; NAS:UniProtKB.
GO:0008135; F:translation factor activity, nucleic acid binding; NAS:UniProtKB.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
7Q7TNP2    601   2AAB_MOUSE Serine/threonine-protein phosphata...1820.16     39.3     25     41
GO:0005515; F:protein binding; IPI:IntAct.
8Q4QQT4    601   2AAB_RAT Serine/threonine-protein phosphatase...1820.18     39.3     25     42
GO:0005488; F:binding; IEA:InterPro.
9P54613    602   2AAB_PIG Serine/threonine-protein phosphatase...1800.72     37.4     25     42
GO:0005488; F:binding; IEA:InterPro.
10P36875    395   2AAA_PEA Protein phosphatase PP2A regulatory ...2301.6     35.8     20     44
GO:0005488; F:binding; IEA:InterPro.
11P30154    601   2AAB_HUMAN Serine/threonine-protein phosphata...1431.9     35.8     24     41
GO:0005488; F:binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.
GO:2001241; P:positive regulation of extrinsic apoptotic signaling pathway in absence of ligand; IMP:UniProtKB.
12Q8WSR4    2698   ITPR_ASTPE Inositol 1,4,5-trisphosphate recep...672.3     35.8     30     52GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0005220; F:inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity; IEA:InterPro.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0007338; P:single fertilization; IEA:UniProtKB-KW.
13P22219    1454   VPS15_YEAST Serine/threonine-protein kinase V...1762.9     35.4     22     47GO:0010008; C:endosome membrane; IEA:UniProtKB-SubCell.::GO:0000139; C:Golgi membrane; TAS:SGD.::GO:0005739; C:mitochondrion; IDA:SGD.::GO:0034271; C:phosphatidylinositol 3-kinase complex I; IDA:SGD.::GO:0034272; C:phosphatidylinositol 3-kinase complex II; IDA:SGD.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IDA:SGD.::GO:0043130; F:ubiquitin binding; IDA:SGD.
GO:0048017; P:inositol lipid-mediated signaling; IMP:SGD.::GO:0045324; P:late endosome to vacuole transport; IMP:SGD.::GO:0016236; P:macroautophagy; IMP:SGD.::GO:0030242; P:peroxisome degradation; IMP:SGD.::GO:0045053; P:protein retention in Golgi apparatus; IMP:SGD.::GO:0006623; P:protein targeting to vacuole; IMP:SGD.::GO:0000011; P:vacuole inheritance; IMP:SGD.
14P31383    635   2AAA_YEAST Protein phosphatase PP2A regulator...1283     35.4     24     48GO:0005935; C:cellular bud neck; IDA:SGD.::GO:0005934; C:cellular bud tip; IDA:SGD.::GO:0043332; C:mating projection tip; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.::GO:0000159; C:protein phosphatase type 2A complex; IDA:SGD.::GO:0005816; C:spindle pole body; IDA:SGD.
GO:0005488; F:binding; IEA:InterPro.
GO:0007015; P:actin filament organization; TAS:SGD.::GO:0007117; P:budding cell bud growth; TAS:SGD.::GO:0007094; P:mitotic cell cycle spindle assembly checkpoint; IMP:SGD.::GO:0006470; P:protein dephosphorylation; TAS:SGD.::GO:0006417; P:regulation of translation; IMP:SGD.
15Q9V677    1890   ECM29_DROME Proteasome-associated protein ECM...733.4     35.4     30     49GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0000502; C:proteasome complex; ISS:UniProtKB.
GO:0005488; F:binding; IEA:InterPro.
16O75155    1236   CAND2_HUMAN Cullin-associated NEDD8-dissociat...1974.3     35     23     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
17Q5SGE0    1392   LPPRC_RAT Leucine-rich PPR motif-containing p...1807.8     34.3     25     42GO:0000794; C:condensed nuclear chromosome; ISS:HGNC.::GO:0005856; C:cytoskeleton; ISS:HGNC.::GO:0005637; C:nuclear inner membrane; IEA:UniProtKB-SubCell.::GO:0005640; C:nuclear outer membrane; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0048471; C:perinuclear region of cytoplasm; ISS:HGNC.
GO:0048487; F:beta-tubulin binding; ISS:HGNC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
18O33845    1829   DPOL_THEAG DNA polymerase OS=Thermococcus agg...1828.9     33.9     25     40
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0016539; P:intein-mediated protein splicing; IEA:InterPro.
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