Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR287C
Length:
969
Number of sequences:
5887
Description:
YMR287C DSS1 SGDID:S000004900, Chr XIII from 845345-842436, Genome Release 64-1-1, reverse complement, Verified ORF, "3'-5' exoribonuclease, component of the mitochondrial degradosome along with the ATP-dependent RNA helicase Suv3p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P39112    969   DSS1_YEAST Exoribonuclease II, mitochondrial ...9690     2004     100     100GO:0045025; C:mitochondrial degradosome; IDA:SGD.::GO:0005759; C:mitochondrial matrix; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IDA:SGD.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000957; P:mitochondrial RNA catabolic process; IMP:SGD.
2P73177    666   RN2H_SYNY3 Uncharacterized ribonuclease sll12...3944e-35     146     29     44
GO:0004540; F:ribonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
3O32231    779   RNR_BACSU Ribonuclease R OS=Bacillus subtilis...4793e-20     100     26     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
4Q1MTN7    957   RPM1_SCHPO Exoribonuclease II, mitochondrial ...4213e-20     100     26     43GO:0005759; C:mitochondrial matrix; ISS:PomBase.
GO:0008859; F:exoribonuclease II activity; ISS:PomBase.::GO:0003723; F:RNA binding; ISS:PomBase.
GO:0000965; P:mitochondrial RNA 3'-end processing; IMP:PomBase.
5A1SWZ6    656   RNB_PSYIN Exoribonuclease 2 OS=Psychromonas i...4093e-20     99.8     26     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
6Q9Z848    676   RNR_CHLPN Ribonuclease R OS=Chlamydia pneumon...4219e-20     98.6     25     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
7Q9WZI1    710   RNR_THEMA Ribonuclease R OS=Thermotoga mariti...4253e-18     94     24     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
8P47950    1117   CYT4_NEUCR Mitochondrial protein cyt-4 OS=125...4734e-18     94     26     41GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
GO:0004540; F:ribonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
9Q9PK00    692   RNR_CHLMU Ribonuclease R OS=Chlamydia muridar...4281e-16     88.2     23     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
10B7VSB8    668   RNB_VIBSL Exoribonuclease 2 OS=Vibrio splendi...4052e-16     87.8     25     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
11O84402    694   RNR_CHLTR Ribonuclease R OS=Chlamydia trachom...4283e-16     87     24     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
12Q9ZJX9    644   RNR_HELPJ Ribonuclease R OS=Helicobacter pylo...4350.000000000000002     84.3     24     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
13B8D7G3    649   RNB_BUCAT Exoribonuclease 2 OS=Buchnera aphid...4470.000000000000002     84.3     24     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
14B8D959    649   RNB_BUCA5 Exoribonuclease 2 OS=Buchnera aphid...4470.000000000000002     84.3     24     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
15P56123    644   RNR_HELPY Ribonuclease R OS=pylori). GN=rnr S...4640.000000000000007     82.8     24     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
16Q7MEL4    664   RNB_VIBVY Exoribonuclease 2 OS=Vibrio vulnifi...3960.000000000000009     82.4     24     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
17P57354    649   RNB_BUCAI Exoribonuclease 2 OS=(Acyrthosiphon...3530.000000000000009     82.4     25     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
18Q8D7K6    664   RNB_VIBVU Exoribonuclease 2 OS=Vibrio vulnifi...5110.00000000000001     82     24     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
19Q87IJ9    668   RNB_VIBPA Exoribonuclease 2 OS=Vibrio parahae...5110.00000000000002     80.9     25     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
20B3GXJ4    658   RNB_ACTP7 Exoribonuclease 2 OS=Actinobacillus...4410.00000000000004     80.1     22     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
21A3N0B9    658   RNB_ACTP2 Exoribonuclease 2 OS=Actinobacillus...4410.00000000000006     79.7     22     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
22B0BP37    658   RNB_ACTPJ Exoribonuclease 2 OS=Actinobacillus...4410.00000000000007     79.7     22     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
23B4EW02    647   RNB_PROMH Exoribonuclease 2 OS=Proteus mirabi...4210.0000000000001     78.6     22     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
24Q7VLX8    659   RNB_HAEDU Exoribonuclease 2 OS=Haemophilus du...4370.0000000000002     77.8     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
25Q89AM0    646   RNB_BUCBP Exoribonuclease 2 OS=Buchnera aphid...4290.0000000000003     77.4     26     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
26A4TJ37    644   RNB_YERPP Exoribonuclease 2 OS=Yersinia pesti...3470.0000000000005     77     23     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
27Q1CIZ7    644   RNB_YERPN Exoribonuclease 2 OS=Yersinia pesti...3470.0000000000005     77     23     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
28A9R8T9    644   RNB_YERPG Exoribonuclease 2 OS=Yersinia pesti...3470.0000000000005     77     23     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
29Q8ZED8    644   RNB_YERPE Exoribonuclease 2 OS=Yersinia pesti...3470.0000000000005     77     23     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
30Q1C7L1    644   RNB_YERPA Exoribonuclease 2 OS=Yersinia pesti...3470.0000000000005     77     23     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
31B2VKS8    647   RNB_ERWT9 Exoribonuclease 2 OS=Erwinia tasman...4270.0000000000005     76.6     22     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
records
Previous ‹‹ ›› Next Total records: 139 1 - 30
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::