Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR287C
Length:
969
Number of sequences:
5887
Description:
YMR287C DSS1 SGDID:S000004900, Chr XIII from 845345-842436, Genome Release 64-1-1, reverse complement, Verified ORF, "3'-5' exoribonuclease, component of the mitochondrial degradosome along with the ATP-dependent RNA helicase Suv3p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
91A5UFG3    659   RNB_HAEIG Exoribonuclease 2 OS=Haemophilus in...3710.000000001     66.2     21     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
92Q31ZY2    644   RNB_SHIBS Exoribonuclease 2 OS=Shigella boydi...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
93B2U0I4    644   RNB_SHIB3 Exoribonuclease 2 OS=Shigella boydi...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
94Q0T5B1    644   RNB_SHIF8 Exoribonuclease 2 OS=Shigella flexn...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
95P59107    644   RNB_SHIFL Exoribonuclease 2 OS=Shigella flexn...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
96Q32GP4    644   RNB_SHIDS Exoribonuclease 2 OS=Shigella dysen...4270.000000001     65.9     21     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
97A9MQ20    644   RNB_SALAR Exoribonuclease 2 OS=Salmonella ari...3520.000000001     65.9     24     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
98B7LY47    644   RNB_ECO8A Exoribonuclease 2 OS=Escherichia co...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
99Q8Z7C9    644   RNB_SALTI Exoribonuclease 2 OS=Salmonella typ...3510.000000001     65.9     24     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
100B5R490    644   RNB_SALEP Exoribonuclease 2 OS=Salmonella ent...3520.000000001     65.9     24     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
101B6IA03    644   RNB_ECOSE Exoribonuclease 2 OS=Escherichia co...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
102P30850    644   RNB_ECOLI Exoribonuclease 2 OS=Escherichia co...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016078; P:tRNA catabolic process; IGI:EcoCyc.
103B1XBN7    644   RNB_ECODH Exoribonuclease 2 OS=Escherichia co...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
104C4ZTY2    644   RNB_ECOBW Exoribonuclease 2 OS=Escherichia co...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
105B7NVR1    644   RNB_ECO7I Exoribonuclease 2 OS=Escherichia co...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
106B5YZR8    644   RNB_ECO5E Exoribonuclease 2 OS=Escherichia co...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
107Q8X7D6    644   RNB_ECO57 Exoribonuclease 2 OS=Escherichia co...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
108B7L4C3    644   RNB_ECO55 Exoribonuclease 2 OS=Escherichia co...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
109A7ZLA9    644   RNB_ECO24 Exoribonuclease 2 OS=Escherichia co...3540.000000001     65.9     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
110Q09568    848   YR86_CAEEL Uncharacterized ribonuclease F48E8...4240.000000001     65.9     25     41
GO:0004540; F:ribonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
111Q8CI75    870   DI3L2_MOUSE DIS3-like exonuclease 2 OS=Mus mu...3650.000000001     65.9     26     42GO:0005737; C:cytoplasm; ISS:UniProtKB.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0004540; F:ribonuclease activity; ISS:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0051306; P:mitotic sister chromatid separation; ISS:UniProtKB.::GO:0008285; P:negative regulation of cell proliferation; ISS:UniProtKB.
112B1LGE7    644   RNB_ECOSM Exoribonuclease 2 OS=Escherichia co...3540.000000001     65.5     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
113Q8IYB7    885   DI3L2_HUMAN DIS3-like exonuclease 2 OS=Homo s...3650.000000001     65.9     25     41GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0004540; F:ribonuclease activity; IDA:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0051306; P:mitotic sister chromatid separation; IMP:UniProtKB.::GO:0008285; P:negative regulation of cell proliferation; IMP:UniProtKB.
114Q3Z135    644   RNB_SHISS Exoribonuclease 2 OS=Shigella sonne...3540.000000002     65.5     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
115B1ITG7    644   RNB_ECOLC Exoribonuclease 2 OS=Escherichia co...3540.000000002     65.5     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
116A7ZZM6    644   RNB_ECOHS Exoribonuclease 2 OS=Escherichia co...3540.000000002     65.5     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
117Q65SI5    659   RNB_MANSM Exoribonuclease 2 OS=Mannheimia suc...3580.000000003     64.7     23     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
118Q9KNY1    821   RNR_VIBCH Ribonuclease R OS=Vibrio cholerae s...3530.000000004     64.3     26     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
119Q02146    665   RNR2_LACLA Ribonuclease R 2 OS=lactis). GN=rn...3750.00000003     61.2     23     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
120P37202    970   DIS3_SCHPO Exosome complex exonuclease dis3 O...4300.00000005     60.8     22     40GO:0000177; C:cytoplasmic exosome (RNase complex); ISS:PomBase.::GO:0005739; C:mitochondrion; ISS:PomBase.::GO:0000176; C:nuclear exosome (RNase complex); ISS:PomBase.
GO:0000175; F:3'-5'-exoribonuclease activity; ISS:PomBase.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0008536; F:Ran GTPase binding; IPI:PomBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0000465; P:exonucleolytic trimming to generate mature 5'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0000070; P:mitotic sister chromatid segregation; IMP:PomBase.::GO:0070651; P:nonfunctional rRNA decay; ISS:PomBase.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; ISS:PomBase.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; ISS:PomBase.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; ISS:PomBase.::GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; ISS:PomBase.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; ISS:PomBase.::GO:0032853; P:positive regulation of Ran GTPase activity; IMP:PomBase.::GO:0040008; P:regulation of growth; IEA:UniProtKB-KW.::GO:0007346; P:regulation of mitotic cell cycle; IMP:PomBase.::GO:0007051; P:spindle organization; IMP:PomBase.
121P75529    726   RNR_MYCPN Ribonuclease R OS=Mycoplasma pneumo...4410.00000006     60.5     22     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
records
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