Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR287C
Length:
969
Number of sequences:
5887
Description:
YMR287C DSS1 SGDID:S000004900, Chr XIII from 845345-842436, Genome Release 64-1-1, reverse complement, Verified ORF, "3'-5' exoribonuclease, component of the mitochondrial degradosome along with the ATP-dependent RNA helicase Suv3p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
121P75529    726   RNR_MYCPN Ribonuclease R OS=Mycoplasma pneumo...4410.00000006     60.5     22     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
122Q0P4R5    1039   DI3L1_XENTR DIS3-like exonuclease 1 OS=Xenopu...4650.0000001     59.7     21     38GO:0000177; C:cytoplasmic exosome (RNase complex); ISS:UniProtKB.
GO:0000175; F:3'-5'-exoribonuclease activity; ISS:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
123Q057Q9    648   RNB_BUCCC Exoribonuclease 2 OS=Buchnera aphid...3560.0000001     59.3     26     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006401; P:RNA catabolic process; IEA:InterPro.
124Q6GN11    1040   DI3L1_XENLA DIS3-like exonuclease 1 OS=Xenopu...4600.0000003     58.5     21     39GO:0000177; C:cytoplasmic exosome (RNase complex); ISS:UniProtKB.
GO:0000175; F:3'-5'-exoribonuclease activity; ISS:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
125P44907    782   RNR_HAEIN Ribonuclease R OS=Haemophilus influ...3620.0000003     58.2     23     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
126Q5U2P0    1054   DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus n...4650.0000005     57.8     23     38GO:0000177; C:cytoplasmic exosome (RNase complex); ISS:UniProtKB.
GO:0000175; F:3'-5'-exoribonuclease activity; ISS:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
127Q8C0S1    1053   DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus mu...4650.000001     56.6     23     38GO:0000177; C:cytoplasmic exosome (RNase complex); ISS:UniProtKB.
GO:0000175; F:3'-5'-exoribonuclease activity; ISS:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
128Q8TF46    1054   DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo s...4710.000001     56.6     22     40GO:0005813; C:centrosome; IDA:HPA.::GO:0000177; C:cytoplasmic exosome (RNase complex); IDA:UniProtKB.::GO:0005886; C:plasma membrane; IDA:HPA.
GO:0000175; F:3'-5'-exoribonuclease activity; IDA:UniProtKB.::GO:0019899; F:enzyme binding; IPI:UniProtKB.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016075; P:rRNA catabolic process; IDA:UniProtKB.
129P57628    731   RNR_BUCAI Ribonuclease R OS=(Acyrthosiphon pi...3130.000002     55.5     22     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
130Q5R5N8    1054   DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo ...4710.000002     55.5     22     40GO:0000177; C:cytoplasmic exosome (RNase complex); ISS:UniProtKB.
GO:0000175; F:3'-5'-exoribonuclease activity; ISS:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
131Q8K917    726   RNR_BUCAP Ribonuclease R OS=Buchnera aphidico...3600.000003     54.7     22     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
132A0JN80    1053   DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos ta...4690.000004     54.7     22     39GO:0000177; C:cytoplasmic exosome (RNase complex); ISS:UniProtKB.
GO:0000175; F:3'-5'-exoribonuclease activity; ISS:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
133Q08162    1001   RRP44_YEAST Exosome complex exonuclease DIS3 ...4360.000007     53.9     21     39GO:0000177; C:cytoplasmic exosome (RNase complex); IDA:SGD.::GO:0005739; C:mitochondrion; IDA:SGD.::GO:0000176; C:nuclear exosome (RNase complex); IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.
GO:0000175; F:3'-5'-exoribonuclease activity; IDA:SGD.::GO:0004521; F:endoribonuclease activity; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0000049; F:tRNA binding; IDA:SGD.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0070651; P:nonfunctional rRNA decay; IMP:SGD.::GO:0071028; P:nuclear mRNA surveillance; IMP:SGD.::GO:0071039; P:nuclear polyadenylation-dependent CUT catabolic process; IMP:SGD.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; IC:SGD.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IMP:SGD.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; IDA:SGD.::GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; IC:SGD.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; IC:SGD.::GO:0071051; P:polyadenylation-dependent snoRNA 3'-end processing; IC:SGD.
134Q9Y2L1    958   RRP44_HUMAN Exosome complex exonuclease RRP44...4580.000007     53.9     20     40GO:0005829; C:cytosol; TAS:Reactome.::GO:0000176; C:nuclear exosome (RNase complex); IDA:UniProtKB.::GO:0005654; C:nucleoplasm; IDA:UniProtKB.
GO:0000175; F:3'-5'-exoribonuclease activity; IMP:UniProtKB.::GO:0004519; F:endonuclease activity; IMP:UniProtKB.::GO:0005085; F:guanyl-nucleotide exchange factor activity; IDA:UniProtKB.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0071034; P:CUT catabolic process; IMP:UniProtKB.::GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0016075; P:rRNA catabolic process; IMP:UniProtKB.::GO:0006364; P:rRNA processing; TAS:UniProtKB.
135Q9CSH3    958   RRP44_MOUSE Exosome complex exonuclease RRP44...4580.00003     52     20     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000176; C:nuclear exosome (RNase complex); ISS:UniProtKB.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; ISS:UniProtKB.
GO:0000175; F:3'-5'-exoribonuclease activity; ISS:UniProtKB.::GO:0004519; F:endonuclease activity; ISS:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
136Q9PR88    721   RNR_UREPA Ribonuclease R OS=Ureaplasma parvum...3600.00004     51.2     24     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
137P54084    439   RNR_THIFE Ribonuclease R OS=Thiobacillus ferr...2920.029     41.6     21     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
138Q9BYK8    2649   PR285_HUMAN Peroxisomal proliferator-activate...1530.049     41.6     26     44GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.::GO:0004540; F:ribonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.::GO:0003713; F:transcription coactivator activity; NAS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0044255; P:cellular lipid metabolic process; TAS:Reactome.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0044281; P:small molecule metabolic process; TAS:Reactome.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
139P24276    1250   SSD1_YEAST Protein SSD1 OS=Saccharomyces cere...1380.052     41.2     29     49GO:0005935; C:cellular bud neck; IDA:SGD.::GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0010494; C:cytoplasmic stress granule; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.
GO:0048027; F:mRNA 5'-UTR binding; IDA:SGD.::GO:0004540; F:ribonuclease activity; IEA:InterPro.::GO:0000900; F:translation repressor activity, nucleic acid binding; IGI:SGD.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0008298; P:intracellular mRNA localization; IMP:SGD.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0060237; P:regulation of fungal-type cell wall organization; IGI:SGD.
records
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