Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR268C
Length:
444
Number of sequences:
5887
Description:
YMR268C PRP24 SGDID:S000004881, Chr XIII from 804222-802888, Genome Release 64-1-1, reverse complement, Verified ORF, "Splicing factor that reanneals U4 and U6 snRNPs during spliceosome recycling"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
211Q9XSR3    592   RBM47_CANFA RNA-binding protein 47 OS=Canis f...483.2     33.9     31     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
212B3M1B7    639   SCC4_DROAN MAU2 chromatid cohesion factor hom...923.2     33.9     29     48GO:0000785; C:chromatin; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; ISS:UniProtKB.::GO:0032116; C:SMC loading complex; ISS:UniProtKB.
GO:0005488; F:binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0034088; P:maintenance of mitotic sister chromatid cohesion; ISS:UniProtKB.
213P16914    483   ELAV_DROME Protein elav OS=Drosophila melanog...1803.4     33.9     22     38GO:0015030; C:Cajal body; IDA:FlyBase.
GO:0003729; F:mRNA binding; NAS:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:FlyBase.::GO:0000900; F:translation repressor activity, nucleic acid binding; NAS:UniProtKB.
GO:0007417; P:central nervous system development; IMP:FlyBase.::GO:0009790; P:embryo development; NAS:UniProtKB.::GO:0007281; P:germ cell development; NAS:UniProtKB.::GO:0031441; P:negative regulation of mRNA 3'-end processing; IDA:FlyBase.::GO:0007319; P:negative regulation of oskar mRNA translation; NAS:UniProtKB.
214P41891    500   GAR2_SCHPO Protein gar2 OS=Schizosaccharomyce...1353.4     33.9     23     43GO:0005730; C:nucleolus; IDA:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:PomBase.
GO:0007000; P:nucleolus organization; IMP:PomBase.::GO:0006364; P:rRNA processing; IMP:PomBase.
215Q7SG09    827   MRD1_NEUCR Multiple RNA-binding domain-contai...733.6     33.9     27     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
216P13469    542   MODU_DROME DNA-binding protein modulo OS=Dros...1173.9     33.5     27     47GO:0005737; C:cytoplasm; IDA:FlyBase.::GO:0005730; C:nucleolus; IDA:FlyBase.::GO:0043234; C:protein complex; IPI:FlyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0043565; F:sequence-specific DNA binding; IDA:FlyBase.
GO:0008283; P:cell proliferation; IMP:FlyBase.::GO:0007286; P:spermatid development; IMP:FlyBase.
217Q296H8    620   SCC4_DROPS MAU2 chromatid cohesion factor hom...944.3     33.5     30     47GO:0000785; C:chromatin; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; ISS:UniProtKB.::GO:0032116; C:SMC loading complex; ISS:UniProtKB.
GO:0005488; F:binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0034088; P:maintenance of mitotic sister chromatid cohesion; ISS:UniProtKB.
218B4GF49    620   SCC4_DROPE MAU2 chromatid cohesion factor hom...944.3     33.5     30     47GO:0000785; C:chromatin; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; ISS:UniProtKB.::GO:0032116; C:SMC loading complex; ISS:UniProtKB.
GO:0005488; F:binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0034088; P:maintenance of mitotic sister chromatid cohesion; ISS:UniProtKB.
219Q86YN6    1023   PRGC2_HUMAN Peroxisome proliferator-activated...434.3     33.5     42     60GO:0016592; C:mediator complex; IDA:UniProtKB.
GO:0050682; F:AF-2 domain binding; IPI:UniProtKB.::GO:0030331; F:estrogen receptor binding; IDA:UniProtKB.::GO:0030374; F:ligand-dependent nuclear receptor transcription coactivator activity; IDA:UniProtKB.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030546; F:receptor activator activity; IDA:UniProtKB.::GO:0004872; F:receptor activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; NAS:UniProtKB.::GO:0001104; F:RNA polymerase II transcription cofactor activity; IDA:UniProtKB.
GO:0030520; P:intracellular estrogen receptor signaling pathway; IDA:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.
220Q5R7X2    1028   SR140_PONAB U2 snRNP-associated SURP motif-co...524.5     33.5     33     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
221O15042    1029   SR140_HUMAN U2 snRNP-associated SURP motif-co...524.5     33.5     33     54GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
222Q6NV83    1029   SR140_MOUSE U2 snRNP-associated SURP motif-co...524.6     33.5     33     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
223Q0V9L3    424   CELF4_XENTR CUGBP Elav-like family member 4 O...734.7     33.1     33     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
224B4JHK2    623   SCC4_DROGR MAU2 chromatid cohesion factor hom...944.8     33.5     30     47GO:0000785; C:chromatin; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; ISS:UniProtKB.::GO:0032116; C:SMC loading complex; ISS:UniProtKB.
GO:0005488; F:binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0034088; P:maintenance of mitotic sister chromatid cohesion; ISS:UniProtKB.
225Q8C5L7    375   RBM34_MOUSE RNA-binding protein 34 OS=Mus mus...1914.8     33.1     23     45GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
226B4M4L4    621   SCC4_DROVI MAU2 chromatid cohesion factor hom...955     33.1     31     49GO:0000785; C:chromatin; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; ISS:UniProtKB.::GO:0032116; C:SMC loading complex; ISS:UniProtKB.
GO:0005488; F:binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0034088; P:maintenance of mitotic sister chromatid cohesion; ISS:UniProtKB.
227Q5ZLN5    414   TADBP_CHICK TAR DNA-binding protein 43 OS=Gal...1015.1     33.1     26     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
228A8WPC5    634   SYM2_CAEBR RNA-binding protein sym-2 OS=Caeno...735.3     33.1     29     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
229Q6ZP01    1051   RBM44_HUMAN RNA-binding protein 44 OS=Homo sa...635.6     33.1     29     56GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0045171; C:intercellular bridge; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0042803; F:protein homodimerization activity; ISS:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
230A5DM21    631   PABP_PICGU Polyadenylate-binding protein, cyt...1815.7     33.1     21     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
231Q10277    533   MSA1_SCHPO Multicopy suppressor of sporulatio...1226     33.1     25     50GO:0005829; C:cytosol; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031138; P:negative regulation of conjugation with cellular fusion; IMP:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
232Q96J87    481   CELF6_HUMAN CUGBP Elav-like family member 6 O...876.1     32.7     30     53GO:0005737; C:cytoplasm; NAS:UniProtKB.::GO:0005634; C:nucleus; NAS:UniProtKB.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.
233P48810    385   RB87F_DROME Heterogeneous nuclear ribonucleop...1076.4     32.7     26     50GO:0000785; C:chromatin; IDA:FlyBase.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0035062; C:omega speckle; IDA:FlyBase.::GO:0005703; C:polytene chromosome puff; IDA:FlyBase.::GO:0030529; C:ribonucleoprotein complex; IDA:FlyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0043565; F:sequence-specific DNA binding; IDA:FlyBase.
GO:0007067; P:mitosis; IMP:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
234B4K4X6    625   SCC4_DROMO MAU2 chromatid cohesion factor hom...946.4     33.1     30     47GO:0000785; C:chromatin; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; ISS:UniProtKB.::GO:0032116; C:SMC loading complex; ISS:UniProtKB.
GO:0005488; F:binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0034088; P:maintenance of mitotic sister chromatid cohesion; ISS:UniProtKB.
235Q5PPI3    139   GSKIP_RAT GSK3-beta interaction protein OS=Ra...576.4     31.6     35     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
236P53883    403   NOP13_YEAST Nucleolar protein 13 OS=Saccharom...696.5     32.7     32     54GO:0005730; C:nucleolus; IDA:SGD.::GO:0030684; C:preribosome; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
237Q8CIN6    465   CELF3_MOUSE CUGBP Elav-like family member 3 O...856.5     32.7     29     49GO:0005737; C:cytoplasm; IDA:MGI.::GO:0005634; C:nucleus; IDA:MGI.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0030317; P:sperm motility; IMP:MGI.::GO:0007283; P:spermatogenesis; IMP:MGI.
238Q0JDM0    903   C3H27_ORYSJ Zinc finger CCCH domain-containin...806.6     33.1     28     49
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
239E1BP74    1742   MARF1_BOVIN Meiosis arrest female protein 1 O...486.6     33.1     44     54GO:0005777; C:peroxisome; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.
240Q08E07    461   CELF3_BOVIN CUGBP Elav-like family member 3 O...856.7     32.7     29     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
241Q7TPD6    673   RAVR2_MOUSE Ribonucleoprotein PTB-binding 2 O...1446.8     32.7     24     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:MGI.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
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