Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR247C
Length:
1562
Number of sequences:
5887
Description:
YMR247C RKR1 SGDID:S000004861, Chr XIII from 768039-763351, Genome Release 64-1-1, reverse complement, Verified ORF, "RING domain E3 ubiquitin ligase; involved in the ubiquitin-mediated degradation of non-stop proteins; functional connections to chromatin modification; nuclear protein that also co-localizes with ribosomes; homolog of mouse Listerin, whose mutation has been reported to cause neurodegeneration in mice"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61Q08CG8    448   RNF44_DANRE RING finger protein 44 OS=Danio r...780.031     42.4     28     50
GO:0008270; F:zinc ion binding; IEA:InterPro.
62Q9R049    643   AMFR_MOUSE E3 ubiquitin-protein ligase AMFR O...500.031     42.7     38     54GO:0030176; C:integral to endoplasmic reticulum membrane; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0004872; F:receptor activity; IEA:UniProtKB-KW.::GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030433; P:ER-associated protein catabolic process; ISS:UniProtKB.::GO:0000209; P:protein polyubiquitination; ISS:UniProtKB.
63Q9C919    178   ATL19_ARATH Putative RING-H2 finger protein A...530.032     40.8     34     58GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
64Q67YI6    411   ATL65_ARATH RING-H2 finger protein ATL65 OS=A...870.032     42.4     30     45GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
65Q84TF5    174   RHA4A_ARATH RING-H2 zinc finger protein RHA4a...310.035     40.8     52     68
GO:0008270; F:zinc ion binding; IEA:InterPro.
66Q9LUZ9    308   ATL63_ARATH RING-H2 finger protein ATL63 OS=A...800.045     41.6     36     53GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
67A8WWR3    578   HRDL1_CAEBR E3 ubiquitin-protein ligase hrd-l...540.046     42     33     54GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043526; P:neuroprotection; ISS:UniProtKB.
68Q5M974    156   RN181_XENTR E3 ubiquitin-protein ligase RNF18...400.048     40     40     60
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
69O80927    235   ATL33_ARATH RING-H2 finger protein ATL33 OS=A...690.052     40.8     28     49GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
70Q12157    165   APC11_YEAST Anaphase-promoting complex subuni...620.057     39.7     27     44GO:0005680; C:anaphase-promoting complex; IDA:SGD.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:SGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0031145; P:anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process; IMP:SGD.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.
71Q9FL07    376   ATL46_ARATH RING-H2 finger protein ATL46 OS=A...520.063     41.2     35     52GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
72Q8LBA0    223   NIPL2_ARATH NEP1-interacting protein-like 2 O...770.069     40.4     26     44GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006952; P:defense response; IEA:UniProtKB-KW.::GO:0010200; P:response to chitin; IEP:TAIR.
73Q9M0R6    302   ATL35_ARATH Putative RING-H2 finger protein A...840.071     40.8     30     49GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
74Q9P0P0    153   RN181_HUMAN E3 ubiquitin-protein ligase RNF18...300.072     39.3     47     63
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
75Q9CR14    375   FANCL_MOUSE E3 ubiquitin-protein ligase FANCL...830.073     40.8     31     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0043240; C:Fanconi anaemia nuclear complex; ISS:UniProtKB.::GO:0005635; C:nuclear envelope; IPI:MGI.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006281; P:DNA repair; ISS:UniProtKB.::GO:0007276; P:gamete generation; IMP:MGI.::GO:0006513; P:protein monoubiquitination; ISS:UniProtKB.::GO:0042127; P:regulation of cell proliferation; IMP:MGI.
76Q7ZW78    156   RN181_DANRE E3 ubiquitin-protein ligase RNF18...300.076     39.3     47     63
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
77Q9SRQ8    356   ATL51_ARATH RING-H2 finger protein ATL51 OS=A...760.079     40.8     28     47GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0080167; P:response to karrikin; IEP:TAIR.
78Q9FHG8    210   ATL50_ARATH Putative RING-H2 finger protein A...740.085     40     30     46GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
79Q803I8    625   SYVN1_DANRE E3 ubiquitin-protein ligase synov...510.086     41.2     35     49GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
80P93823    381   ATL1_ARATH RING-H2 finger protein ATL1 OS=Ara...930.087     40.8     29     46GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
81Q7KRW1    809   TRC8_DROME Protein TRC8 homolog OS=Drosophila...560.089     41.2     36     50GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0045926; P:negative regulation of growth; IMP:UniProtKB.::GO:0007418; P:ventral midline development; IMP:UniProtKB.
82Q3UHC2    2014   LRRK1_MOUSE Leucine-rich repeat serine/threon...1640.1     41.2     24     45
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
GO:0007264; P:small GTPase mediated signal transduction; IEA:InterPro.
83Q9NW38    375   FANCL_HUMAN E3 ubiquitin-protein ligase FANCL...830.11     40.4     34     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0043240; C:Fanconi anaemia nuclear complex; IDA:UniProtKB.
GO:0031625; F:ubiquitin protein ligase binding; IPI:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006281; P:DNA repair; IMP:UniProtKB.::GO:0006513; P:protein monoubiquitination; IDA:UniProtKB.
84Q8W571    323   ATL32_ARATH RING-H2 finger protein ATL32 OS=A...800.12     40     31     51GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
85Q8SV35    314   Y733_ENCCU Uncharacterized RING finger protei...540.12     40     41     54
GO:0008270; F:zinc ion binding; IEA:InterPro.
86Q7XLY8    383   ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g...330.12     40.4     45     58GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
87Q06834    288   ASR1_YEAST Alcohol-sensitive RING finger prot...530.13     40     40     53GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:SGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0045471; P:response to ethanol; IMP:SGD.
88Q3T0W3    153   RN181_BOVIN E3 ubiquitin-protein ligase RNF18...300.13     38.5     47     60
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
89Q3T0X7    266   NSE1_BOVIN Non-structural maintenance of chro...520.13     39.7     35     50GO:0000781; C:chromosome, telomeric region; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030915; C:Smc5-Smc6 complex; ISS:UniProtKB.
GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0035556; P:intracellular signal transduction; IEA:InterPro.::GO:2001022; P:positive regulation of response to DNA damage stimulus; ISS:UniProtKB.
90Q9P7E1    583   YOF7_SCHPO Uncharacterized RING finger protei...590.13     40.4     39     54GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
91Q9CQ29    239   RN151_MOUSE RING finger protein 151 OS=Mus mu...550.14     39.7     33     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:MGI.
GO:0004842; F:ubiquitin-protein ligase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; IEA:UniProtKB-KW.
records
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