Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR247C
Length:
1562
Number of sequences:
5887
Description:
YMR247C RKR1 SGDID:S000004861, Chr XIII from 768039-763351, Genome Release 64-1-1, reverse complement, Verified ORF, "RING domain E3 ubiquitin ligase; involved in the ubiquitin-mediated degradation of non-stop proteins; functional connections to chromatin modification; nuclear protein that also co-localizes with ribosomes; homolog of mouse Listerin, whose mutation has been reported to cause neurodegeneration in mice"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q3ZCF6    84   APC11_BOVIN Anaphase-promoting complex subuni...630.002     43.1     33     44GO:0005680; C:anaphase-promoting complex; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004842; F:ubiquitin-protein ligase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0070979; P:protein K11-linked ubiquitination; ISS:UniProtKB.
32P0C035    310   ATL60_ARATH RING-H2 finger protein ATL60 OS=A...770.002     45.4     32     53GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
33Q9M0R4    357   ATL37_ARATH Putative RING-H2 finger protein A...830.003     45.4     30     51GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
34Q9XF63    324   ATL3_ARATH RING-H2 finger protein ATL3 OS=Ara...520.003     45.4     38     62GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
35P87237    821   YC0C_SCHPO Uncharacterized RING finger protei...580.004     45.8     40     55
GO:0008270; F:zinc ion binding; IEA:InterPro.
36Q9FL42    159   ATL69_ARATH Putative RING-H2 finger protein A...550.004     43.1     40     55GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
37Q9LF64    362   ATL52_ARATH RING-H2 finger protein ATL52 OS=A...850.004     45.1     29     48GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
38Q9ZV53    423   ATL49_ARATH Putative RING-H2 finger protein A...800.004     45.1     33     54GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR.
39Q9SL78    390   ATL12_ARATH Putative RING-H2 finger protein A...880.006     44.7     25     45GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
40Q38SD2    2015   LRRK1_HUMAN Leucine-rich repeat serine/threon...1640.006     45.1     25     48GO:0005739; C:mitochondrion; IDA:HPA.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
GO:0007264; P:small GTPase mediated signal transduction; IEA:InterPro.
41Q5XF85    432   ATL42_ARATH E3 ubiquitin-protein ligase ATL42...860.007     44.3     29     51GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
42P90859    564   HRDL1_CAEEL E3 ubiquitin-protein ligase hrd-l...560.008     44.3     34     54GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0043526; P:neuroprotection; IMP:UniProtKB.
43Q499U6    266   NSE1_RAT Non-structural maintenance of chromo...890.009     43.5     25     48GO:0000781; C:chromosome, telomeric region; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030915; C:Smc5-Smc6 complex; ISS:UniProtKB.
GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0035556; P:intracellular signal transduction; IEA:InterPro.::GO:2001022; P:positive regulation of response to DNA damage stimulus; ISS:UniProtKB.
44Q5EAE9    407   ATL43_ARATH RING-H2 finger protein ATL43 OS=A...780.01     43.9     29     49GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
45Q9SK92    381   ATL15_ARATH E3 ubiquitin-protein ligase ATL15...900.011     43.5     30     46GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0033591; P:response to L-ascorbic acid; IEP:TAIR.::GO:0009416; P:response to light stimulus; IEP:TAIR.
46Q9Y7K6    741   YGI4_SCHPO Uncharacterized RING finger protei...530.011     44.3     40     53GO:0005634; C:nucleus; IDA:PomBase.
GO:0004842; F:ubiquitin-protein ligase activity; ISS:PomBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006325; P:chromatin organization; ISS:PomBase.::GO:0006342; P:chromatin silencing; ISS:PomBase.::GO:0006511; P:ubiquitin-dependent protein catabolic process; ISS:PomBase.
47P0CH30    338   RING1_GOSHI E3 ubiquitin-protein ligase RING1...570.011     43.5     35     54
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
48Q7L0R7    432   RNF44_HUMAN RING finger protein 44 OS=Homo sa...570.012     43.5     39     54
GO:0008270; F:zinc ion binding; IEA:InterPro.
49Q8GW38    369   ATL47_ARATH RING-H2 finger protein ATL47 OS=A...810.014     43.1     32     56GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
50Q9LM69    197   ATL80_ARATH RING-H2 finger protein ATL80 OS=A...750.014     42.4     36     48GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006952; P:defense response; IEA:UniProtKB-KW.::GO:0010200; P:response to chitin; IEP:TAIR.
51Q9LQM2    332   ATL81_ARATH RING-H2 finger protein ATL81 OS=A...780.014     43.1     31     54GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
52Q9FGJ6    166   ATL79_ARATH RING-H2 finger protein ATL79 OS=A...600.015     41.6     35     55GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
53Q6NKR1    254   ATL28_ARATH RING-H2 finger protein ATL28 OS=A...780.017     42.4     29     49GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
54Q6GPV5    156   RN181_XENLA E3 ubiquitin-protein ligase RNF18...400.019     41.2     43     60
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
55Q4V7B8    350   RNF44_RAT RING finger protein 44 OS=Rattus no...570.022     42.7     37     53
GO:0008270; F:zinc ion binding; IEA:InterPro.
56Q8WV22    266   NSE1_HUMAN Non-structural maintenance of chro...930.023     42     25     48GO:0000781; C:chromosome, telomeric region; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030915; C:Smc5-Smc6 complex; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0035556; P:intracellular signal transduction; IEA:InterPro.::GO:2001022; P:positive regulation of response to DNA damage stimulus; IMP:UniProtKB.
57Q3UHJ8    407   RNF44_MOUSE RING finger protein 44 OS=Mus mus...570.024     42.7     37     53
GO:0008270; F:zinc ion binding; IEA:InterPro.
58Q5RAZ5    266   NSE1_PONAB Non-structural maintenance of chro...930.024     42     25     48GO:0000781; C:chromosome, telomeric region; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030915; C:Smc5-Smc6 complex; ISS:UniProtKB.
GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0035556; P:intracellular signal transduction; IEA:InterPro.::GO:2001022; P:positive regulation of response to DNA damage stimulus; ISS:UniProtKB.
59Q8L9W3    163   ATL23_ARATH E3 ubiquitin-protein ligase ATL23...520.024     40.8     33     52GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
60Q9UKV5    643   AMFR2_HUMAN E3 ubiquitin-protein ligase AMFR ...500.029     42.7     38     54GO:0030176; C:integral to endoplasmic reticulum membrane; IDA:UniProtKB.::GO:0000299; C:integral to membrane of membrane fraction; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004872; F:receptor activity; IEA:UniProtKB-KW.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030968; P:endoplasmic reticulum unfolded protein response; IMP:UniProtKB.::GO:0030433; P:ER-associated protein catabolic process; IDA:UniProtKB.::GO:0051259; P:protein oligomerization; IDA:UniProtKB.::GO:0000209; P:protein polyubiquitination; IDA:UniProtKB.
61Q08CG8    448   RNF44_DANRE RING finger protein 44 OS=Danio r...780.031     42.4     28     50
GO:0008270; F:zinc ion binding; IEA:InterPro.
records
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