Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR247C
Length:
1562
Number of sequences:
5887
Description:
YMR247C RKR1 SGDID:S000004861, Chr XIII from 768039-763351, Genome Release 64-1-1, reverse complement, Verified ORF, "RING domain E3 ubiquitin ligase; involved in the ubiquitin-mediated degradation of non-stop proteins; functional connections to chromatin modification; nuclear protein that also co-localizes with ribosomes; homolog of mouse Listerin, whose mutation has been reported to cause neurodegeneration in mice"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
151P38239    180   YBR2_YEAST Uncharacterized RING finger protei...540.82     36.6     35     52
GO:0008270; F:zinc ion binding; IEA:InterPro.
152Q9H0A6    362   RNF32_HUMAN RING finger protein 32 OS=Homo sa...670.83     37.7     30     45GO:0016235; C:aggresome; IDA:MGI.::GO:0005768; C:endosome; IDA:LIFEdb.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
153Q9Y225    148   RNF24_HUMAN RING finger protein 24 OS=Homo sa...490.85     36.2     39     43GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
154Q8RX29    217   ATL70_ARATH RING-H2 finger protein ATL70 OS=A...680.85     37     28     47GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
155O94400    571   YQF7_SCHPO PHD and RING finger domain-contain...280.93     37.7     54     64GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0008270; F:zinc ion binding; IEA:InterPro.
156P0C034    251   ATL10_ARATH RING-H2 finger protein ATL10 OS=A...510.95     37     35     53GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
157O64763    378   ATL9_ARATH E3 ubiquitin-protein ligase ATL9 O...520.96     37.4     37     54GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0050832; P:defense response to fungus; IMP:TAIR.::GO:0010200; P:response to chitin; IEP:TAIR.
158Q0V9R0    954   RN111_XENTR E3 ubiquitin-protein ligase arkad...540.99     37.7     37     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
159Q90ZT7    923   R111A_XENLA E3 ubiquitin-protein ligase arkad...541     37.7     37     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
160Q66J97    967   R111C_XENLA E3 ubiquitin-protein ligase arkad...541     37.7     37     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
161Q4R5T4    362   RNF32_MACFA RING finger protein 32 OS=Macaca ...671     37.4     30     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
162Q9BWF2    469   TRAIP_HUMAN TRAF-interacting protein OS=Homo ...321.1     37.4     41     63GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IDA:HPA.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008283; P:cell proliferation; TAS:ProtInc.::GO:0006917; P:induction of apoptosis; TAS:ProtInc.
163Q6Y290    419   GOLI_RAT E3 ubiquitin-protein ligase RNF130 O...561.1     37.4     36     50GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.
164Q8VEM1    419   GOLI_MOUSE E3 ubiquitin-protein ligase RNF130...561.1     37.4     36     50GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0016021; C:integral to membrane; NAS:UniProtKB.
GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.
165Q5BIY5    695   RN145_XENLA RING finger protein 145 OS=Xenopu...511.2     37.4     33     45GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
166Q8VIG6    470   TRAIP_MOUSE TRAF-interacting protein OS=Mus m...291.2     37.4     41     66GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:MGI.::GO:0005057; F:receptor signaling protein activity; IPI:MGI.::GO:0008270; F:zinc ion binding; IEA:InterPro.
167Q9SN28    236   ATL7_ARATH RING-H2 finger protein ATL7 OS=Ara...491.3     36.6     37     55GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
168Q8LFY8    413   ATL54_ARATH RING-H2 finger protein ATL54 OS=A...871.3     37     28     47GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
169Q86XS8    419   GOLI_HUMAN E3 ubiquitin-protein ligase RNF130...561.3     37     36     50GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005634; C:nucleus; IDA:HPA.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.
170Q6NML0    225   ATL76_ARATH E3 ubiquitin-protein ligase ATL76...501.3     36.6     36     52GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
171Q9M2S6    273   SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1...1121.3     36.6     26     40GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-KW.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005792; C:microsome; IDA:TAIR.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0009789; P:positive regulation of abscisic acid mediated signaling pathway; IMP:TAIR.::GO:0009737; P:response to abscisic acid stimulus; IEP:TAIR.::GO:0009651; P:response to salt stress; IEP:TAIR.::GO:0009414; P:response to water deprivation; IEP:TAIR.
172Q9SN27    225   ATL59_ARATH E3 ubiquitin-protein ligase ATL59...541.3     36.6     39     56GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
173Q0IJ20    695   RN145_XENTR RING finger protein 145 OS=Xenopu...511.3     37.4     33     45GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
174Q6ZNA4    994   RN111_HUMAN E3 ubiquitin-protein ligase Arkad...541.4     37.4     37     54GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005730; C:nucleolus; IDA:HPA.
GO:0005515; F:protein binding; IPI:BHF-UCL.::GO:0004842; F:ubiquitin-protein ligase activity; IMP:BHF-UCL.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IMP:BHF-UCL.
175Q5R476    986   RN111_PONAB E3 ubiquitin-protein ligase Arkad...541.6     37     37     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
176Q9D0C1    305   RN115_MOUSE E3 ubiquitin-protein ligase RNF11...551.6     36.6     33     53GO:0005829; C:cytosol; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0051865; P:protein autoubiquitination; ISS:UniProtKB.
177Q99ML9    989   RN111_MOUSE E3 ubiquitin-protein ligase Arkad...541.6     37     37     54GO:0005737; C:cytoplasm; IDA:BHF-UCL.::GO:0005634; C:nucleus; IDA:BHF-UCL.::GO:0043234; C:protein complex; IDA:MGI.
GO:0004842; F:ubiquitin-protein ligase activity; IMP:BHF-UCL.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007389; P:pattern specification process; IMP:MGI.::GO:0031398; P:positive regulation of protein ubiquitination; IDA:MGI.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:BHF-UCL.::GO:0030511; P:positive regulation of transforming growth factor beta receptor signaling pathway; IDA:MGI.::GO:0000209; P:protein polyubiquitination; IMP:BHF-UCL.::GO:0030579; P:ubiquitin-dependent SMAD protein catabolic process; IMP:BHF-UCL.
178Q9Y4L5    304   RN115_HUMAN E3 ubiquitin-protein ligase RNF11...551.6     36.6     33     53GO:0005829; C:cytosol; ISS:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0051865; P:protein autoubiquitination; IDA:UniProtKB.
179Q9SZL4    145   ATL18_ARATH RING-H2 finger protein ATL18 OS=A...491.6     35     39     45GO:0031225; C:anchored to membrane; TAS:TAIR.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
180Q9ZU51    147   RHA2B_ARATH Probable E3 ubiquitin-protein lig...541.6     35.4     37     50
GO:0004842; F:ubiquitin-protein ligase activity; TAS:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0080167; P:response to karrikin; IEP:TAIR.
181Q8LDB8    381   RING2_ARATH E3 ubiquitin-protein ligase At1g6...521.8     36.6     38     50GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
records
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