Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR247C
Length:
1562
Number of sequences:
5887
Description:
YMR247C RKR1 SGDID:S000004861, Chr XIII from 768039-763351, Genome Release 64-1-1, reverse complement, Verified ORF, "RING domain E3 ubiquitin ligase; involved in the ubiquitin-mediated degradation of non-stop proteins; functional connections to chromatin modification; nuclear protein that also co-localizes with ribosomes; homolog of mouse Listerin, whose mutation has been reported to cause neurodegeneration in mice"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
121Q8LC69    185   ATL8_ARATH RING-H2 finger protein ATL8 OS=Ara...490.33     38.1     37     53GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
122Q9LS99    220   ATL77_ARATH RING-H2 finger protein ATL77 OS=A...500.34     38.1     38     52GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
123P87139    372   YDM9_SCHPO Uncharacterized RING finger protei...550.34     38.9     35     47GO:0000324; C:fungal-type vacuole; IDA:PomBase.::GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005774; C:vacuolar membrane; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016567; P:protein ubiquitination; NAS:PomBase.
124Q9DBY1    612   SYVN1_MOUSE E3 ubiquitin-protein ligase synov...510.35     39.3     33     49GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006916; P:anti-apoptosis; IMP:MGI.::GO:0001701; P:in utero embryonic development; IMP:MGI.
125P29836    676   ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 O...510.36     39.3     33     47
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030683; P:evasion by virus of host immune response; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
126Q5Z5F2    251   ATL61_ORYSJ E3 ubiquitin-protein ligase Os06g...510.37     38.5     29     53GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
127P29128    676   ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 O...510.38     38.9     33     47
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030683; P:evasion by virus of host immune response; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
128Q0WX00    460   RNG1B_ARATH Putative E3 ubiquitin-protein lig...560.39     38.9     34     48GO:0035102; C:PRC1 complex; IPI:UniProtKB.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0001709; P:cell fate determination; IMP:UniProtKB.::GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0010076; P:maintenance of floral meristem identity; IMP:UniProtKB.::GO:0010077; P:maintenance of inflorescence meristem identity; IMP:UniProtKB.::GO:0010492; P:maintenance of shoot apical meristem identity; IMP:UniProtKB.::GO:0045814; P:negative regulation of gene expression, epigenetic; IGI:TAIR.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IGI:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
129A8Y4B2    622   HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 ...530.39     38.9     34     49GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
130Q570X5    261   ATL58_ARATH RING-H2 finger protein ATL58 OS=A...560.4     38.1     36     52GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
131O49691    289   ATL29_ARATH RING-H2 finger protein ATL29 OS=A...520.4     38.5     38     52GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
132Q9FIR0    289   ATL30_ARATH RING-H2 finger protein ATL30 OS=A...810.43     38.1     32     48GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
133Q7ZWF4    685   RN145_DANRE RING finger protein 145 OS=Danio ...510.47     38.9     33     47GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
134Q8L649    248   BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=A...530.49     37.7     36     51
GO:0031624; F:ubiquitin conjugating enzyme binding; IPI:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0048437; P:floral organ development; IMP:TAIR.::GO:0046621; P:negative regulation of organ growth; IMP:TAIR.::GO:0051865; P:protein autoubiquitination; IDA:TAIR.
135Q9SUS4    159   RHA1A_ARATH RING-H2 zinc finger protein RHA1a...480.55     37     31     46
GO:0008270; F:zinc ion binding; IEA:InterPro.
136P36096    758   TUL1_YEAST Transmembrane E3 ubiquitin-protein...630.56     38.5     33     44GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IMP:SGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043162; P:ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway; IMP:SGD.
137Q8H7N9    353   ATL31_ORYSJ E3 ubiquitin-protein ligase Os03g...560.58     38.1     34     50GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
138O88196    1979   TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 O...490.59     38.5     33     51GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0005773; C:vacuole; IDA:MGI.
GO:0005515; F:protein binding; IPI:MGI.::GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0010771; P:negative regulation of cell morphogenesis involved in differentiation; IDA:MGI.::GO:0045665; P:negative regulation of neuron differentiation; IDA:MGI.::GO:0070936; P:protein K48-linked ubiquitination; ISS:UniProtKB.::GO:0006511; P:ubiquitin-dependent protein catabolic process; ISS:UniProtKB.
139Q9ZT50    155   RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A...680.63     36.6     35     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0009738; P:abscisic acid mediated signaling pathway; IEA:UniProtKB-KW.::GO:0009789; P:positive regulation of abscisic acid mediated signaling pathway; IMP:TAIR.::GO:0047484; P:regulation of response to osmotic stress; IMP:TAIR.::GO:0009651; P:response to salt stress; IMP:TAIR.
140Q9H0F5    515   RNF38_HUMAN RING finger protein 38 OS=Homo sa...520.66     38.1     33     52
GO:0008270; F:zinc ion binding; IEA:InterPro.
141Q9LZV8    159   ATL74_ARATH RING-H2 finger protein ATL74 OS=A...520.66     36.6     33     50GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
142Q9LX93    301   ATL55_ARATH E3 ubiquitin-protein ligase RING1...520.69     37.7     33     50GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IDA:TAIR.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006952; P:defense response; IEA:UniProtKB-KW.::GO:0043068; P:positive regulation of programmed cell death; IMP:TAIR.::GO:0051865; P:protein autoubiquitination; IDA:UniProtKB.::GO:0009617; P:response to bacterium; IEP:UniProtKB.::GO:0010200; P:response to chitin; IEP:TAIR.::GO:0002238; P:response to molecule of fungal origin; IEP:UniProtKB.
143G3X9R7    316   RN148_MOUSE RING finger protein 148 OS=Mus mu...550.7     37.7     33     53GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
144O64762    302   ATL38_ARATH RING-H2 finger protein ATL38 OS=A...830.71     37.7     29     49GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
145Q9JIT1    368   RNF32_MOUSE RING finger protein 32 OS=Mus mus...670.73     37.7     30     45
GO:0008270; F:zinc ion binding; IEA:InterPro.
146Q9SJJ7    237   ATL57_ARATH RING-H2 finger protein ATL57 OS=A...550.76     37.4     38     45GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
147Q6NRV8    959   R111B_XENLA E3 ubiquitin-protein ligase arkad...540.77     38.1     37     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
148Q9C1X4    513   YKW3_SCHPO Uncharacterized RING finger protei...540.8     37.7     35     50
GO:0008270; F:zinc ion binding; IEA:InterPro.
149Q9LSW9    375   ATL16_ARATH RING-H2 finger protein ATL16 OS=A...530.8     37.7     34     57GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
150Q8BGI1    148   RNF24_MOUSE RING finger protein 24 OS=Mus mus...490.81     36.2     39     43GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
151P38239    180   YBR2_YEAST Uncharacterized RING finger protei...540.82     36.6     35     52
GO:0008270; F:zinc ion binding; IEA:InterPro.
records
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