Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR247C
Length:
1562
Number of sequences:
5887
Description:
YMR247C RKR1 SGDID:S000004861, Chr XIII from 768039-763351, Genome Release 64-1-1, reverse complement, Verified ORF, "RING domain E3 ubiquitin ligase; involved in the ubiquitin-mediated degradation of non-stop proteins; functional connections to chromatin modification; nuclear protein that also co-localizes with ribosomes; homolog of mouse Listerin, whose mutation has been reported to cause neurodegeneration in mice"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q04781    1562   LTN1_YEAST E3 ubiquitin-protein ligase lister...15620     3183     100     100GO:0005634; C:nucleus; IDA:SGD.
GO:0043022; F:ribosome binding; IDA:SGD.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:SGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006348; P:chromatin silencing at telomere; IMP:SGD.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IMP:SGD.
2O74349    1610   LTN1_SCHPO E3 ubiquitin-protein ligase lister...1960.0000000003     69.3     29     54GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006342; P:chromatin silencing; NAS:PomBase.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; ISS:PomBase.
3E1C231    1766   LTN1_CHICK E3 ubiquitin-protein ligase lister...3340.000000005     65.1     22     44
GO:0008270; F:zinc ion binding; IEA:InterPro.
4A0JM49    1696   LTN1_XENTR E3 ubiquitin-protein ligase lister...2630.00001     54.3     22     43
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
5Q6A009    1767   LTN1_MOUSE E3 ubiquitin-protein ligase lister...3330.000000000004     75.5     22     45
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008219; P:cell death; IEA:UniProtKB-KW.::GO:0051865; P:protein autoubiquitination; IDA:UniProtKB.
6O94822    1766   LTN1_HUMAN E3 ubiquitin-protein ligase lister...3080.0000000005     68.6     22     46
GO:0008270; F:zinc ion binding; IEA:InterPro.
7Q9FGI1    1873   LTN1_ARATH E3 ubiquitin-protein ligase lister...1908.9     34.7     24     44GO:0005829; C:cytosol; IDA:TAIR.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
8Q555H8    1864   LTN1_DICDI E3 ubiquitin-protein ligase lister...3022e-34     148     31     52
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
9Q65XX2    1446   LTN1_CAEEL E3 ubiquitin-protein ligase lister...1720.001     47.4     24     46
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
10B6IFN4    1503   LTN1_CAEBR E3 ubiquitin-protein ligase lister...1920.0001     50.4     25     48
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
11Q9VW09    1747   LTN1_DROME E3 ubiquitin-protein ligase lister...1840.0003     49.7     22     45
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
12Q9LZJ6    257   ATL5_ARATH RING-H2 finger protein ATL5 OS=Ara...760.000002     54.3     33     54GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006461; P:protein complex assembly; TAS:TAIR.
13Q9SLC3    236   ATL41_ARATH E3 ubiquitin-protein ligase ATL41...810.000005     53.1     35     54GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
14Q8LF65    235   ATL17_ARATH RING-H2 finger protein ATL17 OS=A...800.000006     52.8     36     55GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006952; P:defense response; IEA:UniProtKB-KW.::GO:0010200; P:response to chitin; IEP:TAIR.
15Q9SLC4    217   ATL40_ARATH RING-H2 finger protein ATL40 OS=A...760.00001     51.6     34     55GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
16Q6NQG7    219   ATL78_ARATH RING-H2 finger protein ATL78 OS=A...760.00001     51.2     37     51GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
17Q54L48    87   APC11_DICDI Anaphase-promoting complex subuni...620.00002     49.3     37     48GO:0005680; C:anaphase-promoting complex; ISS:dictyBase.
GO:0004842; F:ubiquitin-protein ligase activity; ISS:dictyBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; ISS:dictyBase.
18Q75DC2    328   ASR1_ASHGO Alcohol-sensitive RING finger prot...540.00005     50.8     43     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
19Q8RXD3    310   AIP2_ARATH E3 ubiquitin-protein ligase AIP2 O...690.0002     48.9     36     52GO:0005829; C:cytosol; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0009738; P:abscisic acid mediated signaling pathway; IEA:UniProtKB-KW.::GO:0009788; P:negative regulation of abscisic acid mediated signaling pathway; IMP:UniProtKB.
20Q8L9T5    304   ATL2_ARATH RING-H2 finger protein ATL2 OS=Ara...750.0003     48.5     35     53GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006952; P:defense response; IDA:TAIR.::GO:0010200; P:response to chitin; IEP:TAIR.
21Q9M9L0    84   APC11_ARATH Anaphase-promoting complex subuni...630.0004     45.4     37     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.
22Q9C7I1    327   ATL34_ARATH RING-H2 finger protein ATL34 OS=A...1170.0004     47.8     27     46GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
23Q9LUL6    204   ATL61_ARATH Putative RING-H2 finger protein A...810.0005     46.6     31     51GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
24O22255    227   ATL64_ARATH RING-H2 finger protein ATL64 OS=A...850.001     45.8     34     52GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
25Q9LY41    334   ATL4_ARATH E3 ubiquitin-protein ligase ATL4 O...780.001     46.6     38     50GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
26Q7X843    349   ATL48_ARATH RING-H2 finger protein ATL48 OS=A...790.001     46.6     30     52GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
27Q84W40    404   ATL11_ARATH RING-H2 finger protein ATL11 OS=A...900.002     46.2     28     50GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
28Q5R8A2    84   APC11_PONAB Anaphase-promoting complex subuni...630.002     43.1     33     44GO:0005680; C:anaphase-promoting complex; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004842; F:ubiquitin-protein ligase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0070979; P:protein K11-linked ubiquitination; ISS:UniProtKB.
29Q9NYG5    84   APC11_HUMAN Anaphase-promoting complex subuni...630.002     43.1     33     44GO:0005680; C:anaphase-promoting complex; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0004842; F:ubiquitin-protein ligase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0031145; P:anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process; TAS:Reactome.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; TAS:UniProtKB.::GO:0007094; P:mitotic cell cycle spindle assembly checkpoint; TAS:Reactome.::GO:0051436; P:negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle; TAS:Reactome.::GO:0051437; P:positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle; TAS:Reactome.::GO:0070979; P:protein K11-linked ubiquitination; IDA:UniProtKB.
30Q9CPX9    84   APC11_MOUSE Anaphase-promoting complex subuni...630.002     43.1     33     44GO:0005680; C:anaphase-promoting complex; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004842; F:ubiquitin-protein ligase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0070979; P:protein K11-linked ubiquitination; ISS:UniProtKB.
31Q3ZCF6    84   APC11_BOVIN Anaphase-promoting complex subuni...630.002     43.1     33     44GO:0005680; C:anaphase-promoting complex; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004842; F:ubiquitin-protein ligase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0070979; P:protein K11-linked ubiquitination; ISS:UniProtKB.
records
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