Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR240C
Length:
436
Number of sequences:
5887
Description:
YMR240C CUS1 SGDID:S000004853, Chr XIII from 751240-749930, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein required for assembly of U2 snRNP into the spliceosome, forms a complex with Hsh49p and Hsh155p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q02554    436   CUS1_YEAST Cold sensitive U2 snRNA suppressor...4360     904     100     100GO:0005686; C:U2 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000245; P:spliceosomal complex assembly; IDA:SGD.
2Q13435    895   SF3B2_HUMAN Splicing factor 3B subunit 2 OS=H...2221e-44     170     41     60GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
3Q9UUI3    601   SA145_SCHPO Pre-mRNA-splicing factor sap145 O...3232e-42     162     35     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IDA:PomBase.::GO:0005686; C:U2 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0000245; P:spliceosomal complex assembly; ISS:PomBase.
4P34656    453   YOTA_CAEEL Uncharacterized protein ZK632.11 O...390.38     36.6     41     56
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.
5Q6DD45    743   ZCHC8_XENLA Zinc finger CCHC domain-containin...360.47     36.6     36     69
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
6Q5R789    704   ZCHC8_PONAB Zinc finger CCHC domain-containin...360.67     36.2     36     67GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
7Q6NZY4    707   ZCHC8_HUMAN Zinc finger CCHC domain-containin...360.67     36.2     36     67GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
8Q9CYA6    709   ZCHC8_MOUSE Zinc finger CCHC domain-containin...361.3     35     36     67
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
9Q40885    242   AG_PETHY Floral homeotic protein AGAMOUS OS=P...576.1     32.3     32     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
10Q9FFG1    466   SDN2_ARATH Small RNA degrading nuclease 2 OS=...436.2     32.7     40     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
11Q43585    248   AG_TOBAC Floral homeotic protein AGAMOUS OS=N...577.6     32.3     30     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
records
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