Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR239C
Length:
471
Number of sequences:
5887
Description:
YMR239C RNT1 SGDID:S000004852, Chr XIII from 749677-748262, Genome Release 64-1-1, reverse complement, Verified ORF, "RNAase III; involved in rDNA transcription and rRNA processing; also cleaves a stem-loop structure at the 3' end of U2 snRNA to ensure formation of the correct U2 3' end; involved in polyadenylation-independent transcription termination"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
541Q2U6C4    1523   DCL1_ASPOR Dicer-like protein 1 OS=Aspergillu...442.2     34.7     36     55
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004525; F:ribonuclease III activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0050688; P:regulation of defense response to virus; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.::GO:0006396; P:RNA processing; IEA:InterPro.
542Q4WVE3    1537   DCL1_ASPFU Dicer-like protein 1 OS=A1100) (As...444.1     33.9     34     57
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004629; F:phospholipase C activity; IEA:InterPro.::GO:0004525; F:ribonuclease III activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0035556; P:intracellular signal transduction; IEA:InterPro.::GO:0006629; P:lipid metabolic process; IEA:InterPro.::GO:0050688; P:regulation of defense response to virus; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.::GO:0006396; P:RNA processing; IEA:InterPro.
543A4RKC3    1591   DCL1_MAGO7 Dicer-like protein 1 OS=blast fung...594.2     33.9     29     51
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004525; F:ribonuclease III activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0050688; P:regulation of defense response to virus; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.::GO:0006396; P:RNA processing; IEA:InterPro.
544B1ICC8    461   VATB_STRPI V-type ATP synthase beta chain OS=...985.1     33.1     30     49GO:0033178; C:proton-transporting two-sector ATPase complex, catalytic domain; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:InterPro.::GO:0046933; F:hydrogen ion transporting ATP synthase activity, rotational mechanism; IEA:InterPro.::GO:0046961; F:proton-transporting ATPase activity, rotational mechanism; IEA:InterPro.
GO:0006754; P:ATP biosynthetic process; IEA:UniProtKB-KW.::GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro.
545Q4KFR2    210   KTHY_PSEF5 Thymidylate kinase OS=Pseudomonas ...645.1     32.7     36     55
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004798; F:thymidylate kinase activity; IEA:EC.
GO:0006233; P:dTDP biosynthetic process; IEA:InterPro.
546C1CES1    461   VATB_STRZJ V-type ATP synthase beta chain OS=...985.9     33.1     30     48GO:0033178; C:proton-transporting two-sector ATPase complex, catalytic domain; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:InterPro.::GO:0046933; F:hydrogen ion transporting ATP synthase activity, rotational mechanism; IEA:InterPro.::GO:0046961; F:proton-transporting ATPase activity, rotational mechanism; IEA:InterPro.
GO:0006754; P:ATP biosynthetic process; IEA:UniProtKB-KW.::GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro.
547Q97QA9    461   VATB_STRPN V-type ATP synthase beta chain OS=...985.9     33.1     30     48GO:0033178; C:proton-transporting two-sector ATPase complex, catalytic domain; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:InterPro.::GO:0046933; F:hydrogen ion transporting ATP synthase activity, rotational mechanism; IEA:InterPro.::GO:0046961; F:proton-transporting ATPase activity, rotational mechanism; IEA:InterPro.
GO:0006754; P:ATP biosynthetic process; IEA:UniProtKB-KW.::GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro.
548B8ZK30    461   VATB_STRPJ V-type ATP synthase beta chain OS=...985.9     33.1     30     48GO:0033178; C:proton-transporting two-sector ATPase complex, catalytic domain; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:InterPro.::GO:0046933; F:hydrogen ion transporting ATP synthase activity, rotational mechanism; IEA:InterPro.::GO:0046961; F:proton-transporting ATPase activity, rotational mechanism; IEA:InterPro.
GO:0006754; P:ATP biosynthetic process; IEA:UniProtKB-KW.::GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro.
549B5E551    461   VATB_STRP4 V-type ATP synthase beta chain OS=...985.9     33.1     30     48GO:0033178; C:proton-transporting two-sector ATPase complex, catalytic domain; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:InterPro.::GO:0046933; F:hydrogen ion transporting ATP synthase activity, rotational mechanism; IEA:InterPro.::GO:0046961; F:proton-transporting ATPase activity, rotational mechanism; IEA:InterPro.
GO:0006754; P:ATP biosynthetic process; IEA:UniProtKB-KW.::GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro.
550Q9A805    231   RNC_CAUCR Ribonuclease 3 OS=Caulobacter cresc...477.6     32.3     36     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003725; F:double-stranded RNA binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004525; F:ribonuclease III activity; IEA:EC.::GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0016075; P:rRNA catabolic process; IEA:InterPro.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
551B8H627    231   RNC_CAUCN Ribonuclease 3 OS=Caulobacter cresc...477.6     32.3     36     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003725; F:double-stranded RNA binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004525; F:ribonuclease III activity; IEA:EC.::GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0016075; P:rRNA catabolic process; IEA:InterPro.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
552P84634    1702   DCL4_ARATH Dicer-like protein 4 OS=Arabidopsi...1447.7     33.1     24     36GO:0005634; C:nucleus; IDA:TAIR.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003725; F:double-stranded RNA binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004525; F:ribonuclease III activity; IEA:InterPro.
GO:0051607; P:defense response to virus; IMP:TAIR.::GO:0010216; P:maintenance of DNA methylation; IMP:TAIR.::GO:0010599; P:production of lsiRNA involved in RNA interference; IMP:TAIR.::GO:0010267; P:production of ta-siRNAs involved in RNA interference; IMP:TAIR.::GO:0010050; P:vegetative phase change; IMP:TAIR.
553P34529    1845   DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorha...417.8     33.1     44     54GO:0005622; C:intracellular; IEA:InterPro.::GO:0005625; C:soluble fraction; IDA:WormBase.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0004530; F:deoxyribonuclease I activity; IDA:WormBase.::GO:0003725; F:double-stranded RNA binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:WormBase.::GO:0004525; F:ribonuclease III activity; IDA:WormBase.
GO:0006952; P:defense response; IMP:WormBase.::GO:0006309; P:DNA fragmentation involved in apoptotic nuclear change; IGI:WormBase.::GO:0035262; P:gonad morphogenesis; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0045132; P:meiotic chromosome segregation; IMP:WormBase.::GO:0002009; P:morphogenesis of an epithelium; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0018991; P:oviposition; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0031054; P:pre-miRNA processing; IMP:WormBase.::GO:0030422; P:production of siRNA involved in RNA interference; IMP:WormBase.::GO:0040034; P:regulation of development, heterochronic; IMP:WormBase.::GO:0006401; P:RNA catabolic process; IDA:WormBase.
554Q8E2R5    657   MUTL_STRA3 DNA mismatch repair protein mutL O...848     32.7     29     48
GO:0005524; F:ATP binding; IEA:InterPro.::GO:0030983; F:mismatched DNA binding; IEA:InterPro.
GO:0006298; P:mismatch repair; IEA:InterPro.
555Q8DRX0    651   MUTL_STRMU DNA mismatch repair protein mutL O...1138.5     32.7     27     46
GO:0005524; F:ATP binding; IEA:InterPro.::GO:0030983; F:mismatched DNA binding; IEA:InterPro.
GO:0006298; P:mismatch repair; IEA:InterPro.
556O36966    1759   POLN_DCVEB Replicase polyprotein OS=Drosophil...769.8     32.7     36     51GO:0005622; C:intracellular; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.::GO:0003725; F:double-stranded RNA binding; IEA:InterPro.::GO:0003724; F:RNA helicase activity; IEA:InterPro.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.::GO:0019079; P:viral genome replication; IEA:InterPro.
records
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