Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR233W
Length:
226
Number of sequences:
5887
Description:
YMR233W TRI1 SGDID:S000004846, Chr XIII from 739185-739865, Genome Release 64-1-1, Verified ORF, "Non-essential sumoylated protein of unknown function with similarity to components of human SWI/SNF complex including SMRD3; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm, nucleus and nucleolus"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q05024    226   TRI1_YEAST Protein TRI1 OS=Saccharomyces cere...2263e-160     449     100     100GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
2Q08747    228   UAF30_YEAST Upstream activation factor subuni...1991e-45     157     41     62GO:0000500; C:RNA polymerase I upstream activating factor complex; IDA:SGD.
GO:0001165; F:RNA polymerase I upstream control element sequence-specific DNA binding; IDA:SGD.
GO:0006325; P:chromatin organization; IMP:SGD.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0042790; P:transcription of nuclear large rRNA transcript from RNA polymerase I promoter; IMP:SGD.
3O74503    233   UAF30_SCHPO Upstream activation factor subuni...1931e-24     102     35     57GO:0005829; C:cytosol; IDA:PomBase.::GO:0000500; C:RNA polymerase I upstream activating factor complex; TAS:PomBase.
GO:0005515; F:protein binding; IPI:PomBase.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006360; P:transcription from RNA polymerase I promoter; TAS:PomBase.
4Q9FMT4    534   SNF12_ARATH SWI/SNF complex component SNF12 h...1360.0000001     55.1     31     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IMP:TAIR.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0010224; P:response to UV-B; IEP:TAIR.::GO:0048364; P:root development; IMP:TAIR.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
5Q61466    515   SMRD1_MOUSE SWI/SNF-related matrix-associated...950.000004     50.4     33     51GO:0071565; C:nBAF complex; IDA:UniProtKB.::GO:0071564; C:npBAF complex; IDA:UniProtKB.
GO:0007399; P:nervous system development; IEA:UniProtKB-KW.
6Q96GM5    515   SMRD1_HUMAN SWI/SNF-related matrix-associated...950.000009     49.3     32     51GO:0071565; C:nBAF complex; ISS:UniProtKB.::GO:0071564; C:npBAF complex; ISS:UniProtKB.::GO:0016514; C:SWI/SNF complex; IDA:UniProtKB.
GO:0032947; F:protein complex scaffold; IDA:UniProtKB.::GO:0003713; F:transcription coactivator activity; NAS:BHF-UCL.
GO:0048096; P:chromatin-mediated maintenance of transcription; IMP:UniProtKB.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.::GO:0006337; P:nucleosome disassembly; IDA:BHF-UCL.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; NAS:BHF-UCL.
7Q2TBN1    515   SMRD1_BOVIN SWI/SNF-related matrix-associated...720.00001     49.3     33     57GO:0071565; C:nBAF complex; ISS:UniProtKB.::GO:0071564; C:npBAF complex; ISS:UniProtKB.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.
8Q9SIV5    1773   C3H19_ARATH Zinc finger CCCH domain-containin...1100.0003     45.4     31     50
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
9Q9P7S3    425   SSR3_SCHPO SWI/SNF and RSC complexes subunit ...690.0004     44.7     35     49GO:0005829; C:cytosol; IDA:PomBase.::GO:0000790; C:nuclear chromatin; IC:PomBase.::GO:0016586; C:RSC complex; IDA:PomBase.::GO:0016514; C:SWI/SNF complex; IDA:PomBase.
GO:0000991; F:core RNA polymerase II binding transcription factor activity; ISS:PomBase.
GO:0006338; P:chromatin remodeling; ISS:PomBase.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IC:PomBase.
10Q6P9Z1    483   SMRD3_MOUSE SWI/SNF-related matrix-associated...970.0005     43.9     32     51GO:0071565; C:nBAF complex; IDA:UniProtKB.::GO:0071564; C:npBAF complex; IDA:UniProtKB.
GO:0003219; P:cardiac right ventricle formation; IMP:MGI.::GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0042692; P:muscle cell differentiation; IMP:MGI.::GO:0003407; P:neural retina development; IEP:BHF-UCL.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:MGI.::GO:0043393; P:regulation of protein binding; IDA:MGI.::GO:0003139; P:secondary heart field specification; IMP:MGI.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
11Q6STE5    483   SMRD3_HUMAN SWI/SNF-related matrix-associated...970.0005     43.9     32     51GO:0005737; C:cytoplasm; IDA:BHF-UCL.::GO:0071565; C:nBAF complex; ISS:UniProtKB.::GO:0071564; C:npBAF complex; ISS:UniProtKB.::GO:0000790; C:nuclear chromatin; IDA:BHF-UCL.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005634; C:nucleus; IDA:BHF-UCL.::GO:0016514; C:SWI/SNF complex; NAS:UniProtKB.
GO:0016922; F:ligand-dependent nuclear receptor binding; IPI:BHF-UCL.::GO:0030374; F:ligand-dependent nuclear receptor transcription coactivator activity; IMP:BHF-UCL.::GO:0035257; F:nuclear hormone receptor binding; IPI:UniProtKB.::GO:0003713; F:transcription coactivator activity; NAS:BHF-UCL.::GO:0008134; F:transcription factor binding; IPI:UniProtKB.
GO:0044255; P:cellular lipid metabolic process; TAS:Reactome.::GO:0006338; P:chromatin remodeling; IDA:BHF-UCL.::GO:0003407; P:neural retina development; IEP:BHF-UCL.::GO:0006337; P:nucleosome disassembly; IDA:BHF-UCL.::GO:0002052; P:positive regulation of neuroblast proliferation; IDA:BHF-UCL.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; NAS:BHF-UCL.::GO:0044281; P:small molecule metabolic process; TAS:Reactome.::GO:0006351; P:transcription, DNA-dependent; IDA:UniProtKB.
12Q9SD34    1292   C3H44_ARATH Zinc finger CCCH domain-containin...830.004     41.6     28     54GO:0005634; C:nucleus; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016570; P:histone modification; IEA:InterPro.::GO:0006352; P:transcription initiation, DNA-dependent; IEA:InterPro.
13Q5UQ74    335   YR508_MIMIV Putative SWIB domain-containing p...640.02     38.9     28     64
14Q92925    531   SMRD2_HUMAN SWI/SNF-related matrix-associated...950.03     38.9     29     46GO:0016514; C:SWI/SNF complex; IDA:UniProtKB.
GO:0003713; F:transcription coactivator activity; NAS:UniProtKB.
GO:0006338; P:chromatin remodeling; IDA:BHF-UCL.::GO:0006337; P:nucleosome disassembly; IDA:BHF-UCL.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; NAS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
15Q99JR8    531   SMRD2_MOUSE SWI/SNF-related matrix-associated...950.032     38.5     29     46
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
16O54772    531   SMRD2_RAT SWI/SNF-related matrix-associated a...950.032     38.5     29     46
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
17E1BJD1    531   SMRD2_BOVIN SWI/SNF-related matrix-associated...950.035     38.5     29     46
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
18Q9FT92    553   Y5843_ARATH Uncharacterized protein At5g08430...590.09     37.4     34     61GO:0005634; C:nucleus; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:InterPro.
GO:0016570; P:histone modification; IEA:InterPro.::GO:0006352; P:transcription initiation, DNA-dependent; IEA:InterPro.
19Q91FL8    312   VF306_IIV6 Putative SWIB domain-containing pr...480.27     35.4     38     63
20P38333    483   ENP1_YEAST Essential nuclear protein 1 OS=Sac...460.83     34.3     41     67GO:0030686; C:90S preribosome; IDA:SGD.::GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0030688; C:preribosome, small subunit precursor; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0030515; F:snoRNA binding; IDA:SGD.
GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.
21P29146    793   NECA_HYDVU PC3-like endoprotease variant A OS...1760.9     34.3     24     43
GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro.
GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
22Q556Z0    456   SNF12_DICDI SWI/SNF complex component SNF12 h...551.2     33.5     33     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
23Q9ZI49    199   RL4_AQUPY 50S ribosomal protein L4 OS=Aquifex...633     32     33     59GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
24Q6PDZ2    836   TAF1C_MOUSE TATA box-binding protein-associat...1343.2     32.3     25     43GO:0000120; C:RNA polymerase I transcription factor complex; TAS:MGI.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:MGI.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006360; P:transcription from RNA polymerase I promoter; TAS:MGI.
25Q6P1C1    489   IPPK_MOUSE Inositol-pentakisphosphate 2-kinas...645.4     31.6     25     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0035299; F:inositol pentakisphosphate 2-kinase activity; ISS:HGNC.
GO:0052746; P:inositol phosphorylation; ISS:BHF-UCL.
26A3QDZ3    609   UVRC_SHELP UvrABC system protein C OS=Shewane...446.3     31.6     39     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0009380; C:excinuclease repair complex; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009381; F:excinuclease ABC activity; IEA:InterPro.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
27Q52G60    773   CEF1_MAGO7 Pre-mRNA-splicing factor CEF1 OS=b...656.5     31.6     28     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
28Q196Z0    282   VF306_IIV3 Putative SWIB domain-containing pr...718.9     30.8     32     52
records
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