UniProt_SwissProt BLAST: Single locus

Species:

Saccharomyces cerevisiae S288C

Locus:

YMR229C

Length:

1729

Number of sequences:

5887

Description:

YMR229C RRP5 SGDID:S000004842, Chr XIII from 731123-725934, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA binding protein with preference for single stranded tracts of U's involved in synthesis of both 18S and 5.8S rRNAs; component of both the ribosomal small subunit (SSU) processosome and the 90S preribosome"

rec.	Subject	Hit Length	Description	Align.Len	E value	Bit score	% ident.	% pos.	GO associations
1	Q05022	1729	RRP5_YEAST rRNA biogenesis protein RRP5 OS=Sa...	1729	0	3499	100	100	GO:0030686; C:90S preribosome; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
									GO:0008266; F:poly(U) RNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.
									GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000464; P:endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.
2	O74835	1690	RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Sc...	1765	0	899	35	56	GO:0005730; C:nucleolus; IDA:PomBase.::GO:0032040; C:small-subunit processome; ISS:PomBase.
									GO:0042134; F:rRNA primary transcript binding; ISS:PomBase.::GO:0030515; F:snoRNA binding; ISS:PomBase.
									GO:0006397; P:mRNA processing; IEA:InterPro.::GO:0006364; P:rRNA processing; ISS:PomBase.
3	Q14690	1871	RRP5_HUMAN Protein RRP5 homolog OS=Homo sapie...	69	9.3	35	29	48	GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
									GO:0003723; F:RNA binding; IEA:InterPro.::GO:0008134; F:transcription factor binding; IPI:UniProtKB.
									GO:0006397; P:mRNA processing; IEA:InterPro.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
4	Q6NS46	1862	RRP5_MOUSE Protein RRP5 homolog OS=Mus muscul...	115	0.01	44.7	28	50	GO:0005829; C:cytosol; IDA:MGI.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
									GO:0003723; F:RNA binding; IEA:InterPro.
									GO:0006915; P:apoptotic process; TAS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:InterPro.::GO:0043123; P:positive regulation of I-kappaB kinase/NF-kappaB cascade; TAS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; TAS:UniProtKB.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
5	A7MB10	1874	RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus...	69	4.3	35.8	30	49	GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
									GO:0003723; F:RNA binding; IEA:InterPro.
									GO:0006397; P:mRNA processing; IEA:InterPro.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
6	O06000	382	RS1H_BACC1 30S ribosomal protein S1 homolog O...	325	0.048	41.6	21	45	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
7	P50889	429	RS1_LEULA 40S ribosomal protein S1 OS=Leucono...	70	2.8	36.2	30	49	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
8	Q9Z8M3	580	RS1_CHLPN 30S ribosomal protein S1 OS=Chlamyd...	327	0.095	41.2	21	40	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
9	Q92HM4	568	RS1_RICCN 30S ribosomal protein S1 OS=Rickett...	356	0.00008	51.2	23	42	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
10	P38016	570	RS1_CHLMU 30S ribosomal protein S1 OS=Chlamyd...	332	0.001	47.4	24	42	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
11	Q4ULF1	568	RS1_RICFE 30S ribosomal protein S1 OS=Rickett...	356	0.000008	54.3	24	42	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
12	Q1XDE2	263	RR1_PORYE 30S ribosomal protein S1, chloropla...	149	0.022	42.4	28	48	GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:InterPro.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
13	O84100	569	RS1_CHLTR 30S ribosomal protein S1 OS=Chlamyd...	332	0.007	44.7	23	42	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
14	P38494	382	RS1H_BACSU 30S ribosomal protein S1 homolog O...	167	0.01	43.9	29	45	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
15	Q1RJH1	572	RS1_RICBR 30S ribosomal protein S1 OS=Rickett...	312	0.00006	51.6	24	45	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
16	Q49XT0	393	RS1_STAS1 30S ribosomal protein S1 OS=DSM 202...	405	3	35.8	21	44	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
17	P0AG70	557	RS1_SHIFL 30S ribosomal protein S1 OS=Shigell...	344	0.5	38.9	23	40	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
18	P0AG67	557	RS1_ECOLI 30S ribosomal protein S1 OS=Escheri...	344	0.5	38.9	23	40	GO:0022627; C:cytosolic small ribosomal subunit; IDA:EcoCyc.::GO:0016020; C:membrane; IDA:UniProtKB.
									GO:0003729; F:mRNA binding; IDA:EcoCyc.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:2000766; P:negative regulation of cytoplasmic translation; IEP:EcoCyc.::GO:0006412; P:translation; IMP:EcoCyc.
19	P0AG68	557	RS1_ECOL6 30S ribosomal protein S1 OS=Escheri...	344	0.5	38.9	23	40	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
20	P0AG69	557	RS1_ECO57 30S ribosomal protein S1 OS=Escheri...	344	0.5	38.9	23	40	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
21	P37985	557	RS1_DICD3 30S ribosomal protein S1 OS=Dickeya...	346	1.7	37	23	40	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
22	Q9HZ71	559	RS1_PSEAE 30S ribosomal protein S1 OS=12228)....	140	1.5	37.4	24	49	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
23	Q8NWM8	391	RS1_STAAW 30S ribosomal protein S1 OS=Staphyl...	175	1.4	37	27	46	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
24	Q6G987	391	RS1_STAAS 30S ribosomal protein S1 OS=Staphyl...	175	1.4	37	27	46	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
25	Q5HFU7	391	RS1_STAAC 30S ribosomal protein S1 OS=Staphyl...	175	1.4	37	27	46	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
26	P14128	378	RS1_PROSP 30S ribosomal protein S1 OS=Provide...	301	0.00004	51.6	23	42	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
27	P51345	263	RR1_PORPU 30S ribosomal protein S1, chloropla...	124	0.92	37.4	29	47	GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:InterPro.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
28	Q44653	559	RS1_BUCAP 30S ribosomal protein S1 OS=Buchner...	244	0.33	39.3	23	45	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
29	Q7A5J0	391	RS1_STAAN 30S ribosomal protein S1 OS=Staphyl...	175	1.4	37	27	46	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
30	Q99U14	391	RS1_STAAM 30S ribosomal protein S1 OS=Staphyl...	175	1.4	37	27	46	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.
31	Q48082	549	RS1_HAEIN 30S ribosomal protein S1 OS=Haemoph...	361	0.004	45.4	23	42	GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; IEA:InterPro.

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