Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR229C
Length:
1729
Number of sequences:
5887
Description:
YMR229C RRP5 SGDID:S000004842, Chr XIII from 731123-725934, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA binding protein with preference for single stranded tracts of U's involved in synthesis of both 18S and 5.8S rRNAs; component of both the ribosomal small subunit (SSU) processosome and the 90S preribosome"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q48082    549   RS1_HAEIN 30S ribosomal protein S1 OS=Haemoph...3610.004     45.4     23     42GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
32P46836    481   RS1_MYCLE 30S ribosomal protein S1 OS=Mycobac...3070.018     43.5     25     42GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
33Q6GGT5    391   RS1_STAAR 30S ribosomal protein S1 OS=Staphyl...1177.7     34.7     24     49GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
34Q89AJ3    566   RS1_BUCBP 30S ribosomal protein S1 OS=Buchner...1520.0000008     57.8     32     51GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
35Q9JZ44    561   RS1_NEIMB 30S ribosomal protein S1 OS=Neisser...2160.016     43.5     23     44GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
36Q9ZKF6    552   RS1_HELPJ 30S ribosomal protein S1 OS=Helicob...3580.002     46.2     23     42GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
37P29344    411   RR1_SPIOL 30S ribosomal protein S1, chloropla...1441.8     36.6     27     41GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
38P56008    556   RS1_HELPY 30S ribosomal protein S1 OS=pylori)...3580.011     44.3     23     42GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
39Q4L6I1    392   RS1_STAHJ 30S ribosomal protein S1 OS=Staphyl...2180.001     47     22     52GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
40O06147    481   RS1_MYCTU 30S ribosomal protein S1 OS=Mycobac...3070.009     44.3     25     42GO:0005618; C:cell wall; IDA:MTBBASE.::GO:0005829; C:cytosol; IDA:MTBBASE.::GO:0005886; C:plasma membrane; IDA:MTBBASE.::GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0040007; P:growth; IMP:MTBBASE.::GO:0006412; P:translation; IEA:InterPro.
41Q97I09    642   ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl dipho...4020.057     42     21     40GO:0005840; C:ribosome; IEA:InterPro.
GO:0051538; F:3 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.::GO:0051745; F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:InterPro.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0019288; P:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; IEA:InterPro.::GO:0006412; P:translation; IEA:InterPro.
42P57395    558   RS1_BUCAI 30S ribosomal protein S1 OS=(Acyrth...1600.075     41.6     24     49GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
43Q83E09    551   RS1_COXBU 30S ribosomal protein S1 OS=Coxiell...3800.000001     57     23     43GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
44P14129    568   RS1_RHIME 30S ribosomal protein S1 OS=melilot...3810.63     38.5     24     43GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
45Q5HP69    392   RS1_STAEQ 30S ribosomal protein S1 OS=Staphyl...4160.00002     52.8     22     44GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
46P74142    305   RS1B_SYNY3 30S ribosomal protein S1 homolog B...1520.082     40.8     23     47GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
47Q68WL4    568   RS1_RICTY 30S ribosomal protein S1 OS=Rickett...3410.0006     48.1     23     43GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
48Q9ZD28    568   RS1_RICPR 30S ribosomal protein S1 OS=Rickett...3270.001     47     23     42GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
49P71353    762   Y568_HAEIN Uncharacterized protein HI_0568 OS...469.7     34.7     37     63
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0016788; F:hydrolase activity, acting on ester bonds; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:InterPro.
50P46837    773   YHGF_ECOLI Protein yhgF OS=Escherichia coli (...870.04     42.4     31     54
GO:0016788; F:hydrolase activity, acting on ester bonds; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
51Q6NDP1    565   RS1_RHOPA 30S ribosomal protein S1 OS=Rhodops...3501.5     37.4     22     41GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
52O29723    267   IF2A_ARCFU Translation initiation factor 2 su...830.026     42.4     31     53GO:0005850; C:eukaryotic translation initiation factor 2 complex; IEA:InterPro.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
53P80870    130   GS13_BACSU General stress protein 13 OS=Bacil...661     35.4     33     55GO:0005840; C:ribosome; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:InterPro.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006950; P:response to stress; IEA:UniProtKB-KW.::GO:0006412; P:translation; IEA:InterPro.
54P87312    674   CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=S...2150.47     38.9     21     43GO:0005681; C:spliceosomal complex; IDA:PomBase.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IC:PomBase.
55Q6CJK2    684   CLF1_KLULA Pre-mRNA-splicing factor CLF1 OS=1...588.9     34.7     38     52GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
56Q8RI52    827   ISPH_FUSNN 4-hydroxy-3-methylbut-2-enyl dipho...2380.58     38.5     24     44GO:0005840; C:ribosome; IEA:InterPro.
GO:0051538; F:3 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.::GO:0051745; F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:InterPro.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0019288; P:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; IEA:InterPro.::GO:0006412; P:translation; IEA:InterPro.
57P73530    328   RS1A_SYNY3 30S ribosomal protein S1 homolog A...1380.009     43.9     30     46GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
58Q4WT84    676   CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=A...828.7     34.7     27     55GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
59P57072    757   YHGF_NEIMA Uncharacterized protein NMA0194 OS...670.41     39.3     39     57
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0016788; F:hydrolase activity, acting on ester bonds; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:InterPro.
60Q51152    757   YHGF_NEIMB Uncharacterized protein NMB0075 OS...610.45     38.9     39     59
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0016788; F:hydrolase activity, acting on ester bonds; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:InterPro.
61A8ZZ59    721   PNP_DESOH Polyribonucleotide nucleotidyltrans...860.00003     52.8     35     60GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
records
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