Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR131C
Length:
511
Number of sequences:
5887
Description:
YMR131C RRB1 SGDID:S000004738, Chr XIII from 534698-533163, Genome Release 64-1-1, reverse complement, Verified ORF, "Essential nuclear protein involved in early steps of ribosome biogenesis; physically interacts with the ribosomal protein Rpl3p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
151Q5ZMV9    705   WDR24_CHICK WD repeat-containing protein 24 O...879.8     32.7     22     46
152Q9BVA0    655   KTNB1_HUMAN Katanin p80 WD40-containing subun...1040.1     38.9     29     44GO:0008352; C:katanin complex; TAS:UniProtKB.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IDA:HPA.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0008017; F:microtubule binding; NAS:UniProtKB.::GO:0046982; F:protein heterodimerization activity; IPI:UniProtKB.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0007026; P:negative regulation of microtubule depolymerization; IMP:UniProtKB.::GO:0031117; P:positive regulation of microtubule depolymerization; IMP:UniProtKB.::GO:0006605; P:protein targeting; NAS:UniProtKB.
153Q5E9I7    342   MEP50_BOVIN Methylosome protein 50 OS=Bos tau...680.61     36.2     32     44GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
154B4P7Q3    335   CIAO1_DROYA Probable cytosolic iron-sulfur pr...1800.0003     46.6     25     44
GO:0016226; P:iron-sulfur cluster assembly; ISS:UniProtKB.
155Q12021    506   RAD28_YEAST Radiation-sensitive protein 28 OS...2100.0003     47     25     42GO:0005634; C:nucleus; IC:SGD.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
156Q6C414    1184   SEC31_YARLI Protein transport protein SEC31 O...1671.9     35     25     40GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
157P59235    380   NUP43_MOUSE Nucleoporin Nup43 OS=Mus musculus...1350.0004     46.6     23     47GO:0000777; C:condensed chromosome kinetochore; IEA:UniProtKB-SubCell.::GO:0031080; C:Nup107-160 complex; ISS:UniProtKB.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.
158Q5U4F6    535   WDR34_MOUSE WD repeat-containing protein 34 O...2720.86     35.8     21     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
159Q6PE01    358   SNR40_MOUSE U5 small nuclear ribonucleoprotei...1261.5     35     25     38
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
160C5MIB1    1110   RTC1_CANTT Restriction of telomere capping pr...806.1     33.5     30     50GO:0005773; C:vacuole; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
161P43254    675   COP1_ARATH E3 ubiquitin-protein ligase COP1 O...1380.019     41.2     25     42GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:TAIR.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000152; C:nuclear ubiquitin ligase complex; TAS:TAIR.
GO:0042802; F:identical protein binding; IPI:IntAct.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0046283; P:anthocyanin metabolic process; IMP:TAIR.::GO:0006281; P:DNA repair; IMP:TAIR.::GO:0009649; P:entrainment of circadian clock; IMP:TAIR.::GO:0009640; P:photomorphogenesis; IGI:TAIR.::GO:0048573; P:photoperiodism, flowering; IMP:TAIR.::GO:0009585; P:red, far-red light phototransduction; IEA:UniProtKB-KW.::GO:0010119; P:regulation of stomatal movement; IMP:TAIR.::GO:0009641; P:shade avoidance; IMP:TAIR.::GO:0009647; P:skotomorphogenesis; TAS:TAIR.
162A8XEN7    554   DCA11_CAEBR DDB1- and CUL4-associated factor ...703.2     34.3     31     51
GO:0008340; P:determination of adult lifespan; ISS:UniProtKB.
163Q6BYU4    985   HIR1_DEBHA Protein HIR1 OS=0083 / IGC 2968) (...1960.0004     47     25     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
164C4YN69    1088   RTC1_CANAW Restriction of telomere capping pr...1350.0004     47     26     53GO:0005773; C:vacuole; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
165Q5ACL4    1088   RTC1_CANAL Restriction of telomere capping pr...1350.0004     47     26     53GO:0005773; C:vacuole; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
166Q96DI7    357   SNR40_HUMAN U5 small nuclear ribonucleoprotei...1261.6     34.7     25     38GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005732; C:small nucleolar ribonucleoprotein complex; NAS:UniProtKB.::GO:0005682; C:U5 snRNP; TAS:ProtInc.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
167Q86A97    400   TSSC1_DICDI Protein tssc1 homolog OS=Dictyost...1150.0004     46.2     34     49GO:0045335; C:phagocytic vesicle; IDA:dictyBase.
168Q9UT73    576   YIPH_SCHPO Uncharacterized WD repeat-containi...1307.9     32.7     27     45GO:0043234; C:protein complex; NAS:PomBase.
GO:0000132; P:establishment of mitotic spindle orientation; ISS:PomBase.
169B4KTK4    331   CIAO1_DROMO Probable cytosolic iron-sulfur pr...1800.0005     45.8     24     45
GO:0016226; P:iron-sulfur cluster assembly; ISS:UniProtKB.
170Q2HJH6    358   SNR40_BOVIN U5 small nuclear ribonucleoprotei...1261.3     35     25     38GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
171Q66HC9    619   DNAI2_RAT Dynein intermediate chain 2, axonem...1370.0005     46.2     27     43GO:0035085; C:cilium axoneme; IEA:UniProtKB-SubCell.::GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0030286; C:dynein complex; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.
GO:0003774; F:motor activity; IEA:UniProtKB-KW.
GO:0030030; P:cell projection organization; IEA:UniProtKB-KW.
172Q9C0J8    1336   WDR33_HUMAN pre-mRNA 3' end processing protei...1380.056     40     23     43GO:0005581; C:collagen; IEA:UniProtKB-KW.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006301; P:postreplication repair; NAS:UniProtKB.::GO:0007283; P:spermatogenesis; NAS:UniProtKB.
173Q9USR0    404   CKN1_SCHPO DNA excision repair protein ckn1 O...1340.33     37     19     47GO:0005829; C:cytosol; IDA:PomBase.::GO:0070912; C:Ddb1-Ckn1 complex; IDA:PomBase.
GO:0006283; P:transcription-coupled nucleotide-excision repair; IMP:PomBase.
174Q9LPV9    346   LWD1_ARATH WD repeat-containing protein LWD1 ...1330.0006     45.8     24     47GO:0005634; C:nucleus; IDA:TAIR.
GO:0044212; F:transcription regulatory region DNA binding; IDA:TAIR.
GO:0009718; P:anthocyanin biosynthetic process; NAS:TAIR.::GO:0043153; P:entrainment of circadian clock by photoperiod; IEP:TAIR.::GO:0048573; P:photoperiodism, flowering; IMP:TAIR.::GO:0048511; P:rhythmic process; IEA:UniProtKB-KW.
175Q2UF60    1273   SEC31_ASPOR Protein transport protein sec31 O...1880.0006     46.2     20     42GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
176Q9SYX2    1029   SPA1_ARATH Protein SUPPRESSOR OF PHYA-105 1 O...1210.24     37.7     22     44GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:TAIR.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0042802; F:identical protein binding; IPI:IntAct.::GO:0004672; F:protein kinase activity; IEA:InterPro.
GO:0009658; P:chloroplast organization; IMP:TAIR.::GO:0010100; P:negative regulation of photomorphogenesis; IMP:TAIR.::GO:0009640; P:photomorphogenesis; IMP:TAIR.::GO:0009585; P:red, far-red light phototransduction; IGI:TAIR.::GO:2000028; P:regulation of photoperiodism, flowering; IMP:TAIR.::GO:0010218; P:response to far red light; IEP:TAIR.::GO:0010114; P:response to red light; IEP:TAIR.::GO:0048575; P:short-day photoperiodism, flowering; IMP:TAIR.
177Q6CT00    512   YD156_KLULA WD repeat-containing protein KLLA...1320.0006     45.8     24     51
178Q8TEQ6    1508   GEMI5_HUMAN Gem-associated protein 5 OS=Homo ...871.5     35.4     26     44GO:0015030; C:Cajal body; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0017069; F:snRNA binding; IDA:UniProtKB.
GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0006461; P:protein complex assembly; TAS:UniProtKB.::GO:0000387; P:spliceosomal snRNP assembly; TAS:UniProtKB.
179C5MJE8    490   LIS1_CANTT Nuclear distribution protein PAC1 ...1100.0007     45.8     26     47GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
180P18851    423   GBB_YEAST Guanine nucleotide-binding protein ...1280.15     38.1     28     45GO:0005834; C:heterotrimeric G-protein complex; IDA:SGD.::GO:0005937; C:mating projection; IDA:SGD.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004871; F:signal transducer activity; IMP:SGD.
GO:0031684; P:heterotrimeric G-protein complex cycle; IMP:SGD.::GO:0001403; P:invasive growth in response to glucose limitation; IMP:SGD.::GO:0000750; P:pheromone-dependent signal transduction involved in conjugation with cellular fusion; IGI:SGD.::GO:0010525; P:regulation of transposition, RNA-mediated; IMP:SGD.
181Q8K4P0    1330   WDR33_MOUSE pre-mRNA 3' end processing protei...1380.07     39.7     22     43GO:0005581; C:collagen; IEA:UniProtKB-KW.::GO:0005634; C:nucleus; IDA:MGI.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
records
Previous ‹‹ ›› Next Total records: 1000 151 - 180
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::