Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR072W
Length:
183
Number of sequences:
5887
Description:
YMR072W ABF2 SGDID:S000004676, Chr XIII from 411569-412120, Genome Release 64-1-1, Verified ORF, "Mitochondrial DNA-binding protein involved in mitochondrial DNA replication and recombination, member of HMG1 DNA-binding protein family; activity may be regulated by protein kinase A phosphorylation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q02486    183   ABF2_YEAST ARS-binding factor 2, mitochondria...1831e-130     371     100     100GO:0000262; C:mitochondrial chromosome; IDA:SGD.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0008301; F:DNA binding, bending; IDA:SGD.
GO:0090139; P:mitochondrial DNA packaging; IMP:SGD.::GO:0000002; P:mitochondrial genome maintenance; IMP:SGD.::GO:0000001; P:mitochondrion inheritance; IMP:SGD.
2P33417    597   IXR1_YEAST Intrastrand cross-link recognition...1572e-32     126     37     65GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003684; F:damaged DNA binding; IDA:SGD.::GO:0043565; F:sequence-specific DNA binding; IDA:SGD.
GO:0071456; P:cellular response to hypoxia; IMP:SGD.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
3O49596    144   HMGB2_ARATH High mobility group B protein 2 O...700.002     40.4     36     51GO:0000785; C:chromatin; TAS:TAIR.::GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0003682; F:chromatin binding; TAS:TAIR.::GO:0003677; F:DNA binding; IDA:TAIR.::GO:0030527; F:structural constituent of chromatin; TAS:TAIR.
GO:0006333; P:chromatin assembly or disassembly; TAS:TAIR.
4Q4H2R2    704   SSRP1_CIOIN FACT complex subunit SSRP1 OS=Cio...630.45     34.7     29     57GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
5P40622    114   HMG1A_CHITE Mobility group protein 1A OS=Chir...662.4     31.2     24     53GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
6Q9W602    693   SSRP1_XENLA FACT complex subunit SSRP1 OS=Xen...730.016     38.9     27     58GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
7P93047    141   HMGB3_ARATH High mobility group B protein 3 O...700.039     36.6     33     51GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
8Q9SUP7    456   HMGB6_ARATH High mobility group B protein 6 O...1970.00004     46.6     23     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IDA:TAIR.
9Q06943    111   HMGZ_DROME High mobility group protein Z OS=D...700.006     38.5     33     53GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
10P07746    204   HMGT_ONCMY High mobility group-T protein OS=O...1280.000004     48.9     27     51GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
11P40621    161   HMGL_WHEAT HMG1/2-like protein OS=Triticum ae...700.048     36.6     33     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
12P25980    701   UBF1B_XENLA Nucleolar transcription factor 1-...1570.00000007     55.1     24     48GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0045943; P:positive regulation of transcription from RNA polymerase I promoter; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
13O64702    151   HMG14_ARATH High mobility group B protein 14 ...720.0007     41.6     33     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
14O15347    200   HMGB3_HUMAN High mobility group protein B3 OS...860.0000004     51.2     34     51GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0008301; F:DNA binding, bending; ISS:UniProtKB.::GO:0003690; F:double-stranded DNA binding; ISS:UniProtKB.
GO:0006310; P:DNA recombination; ISS:UniProtKB.::GO:0007275; P:multicellular organismal development; TAS:ProtInc.
15P25979    677   UBF1A_XENLA Nucleolar transcription factor 1-...1570.0000001     54.3     25     48GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0045943; P:positive regulation of transcription from RNA polymerase I promoter; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
16P12682    215   HMGB1_PIG High mobility group protein B1 OS=S...1650.0000001     52.8     26     47GO:0000793; C:condensed chromosome; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006288; P:base-excision repair, DNA ligation; ISS:UniProtKB.::GO:0017055; P:negative regulation of RNA polymerase II transcriptional preinitiation complex assembly; ISS:UniProtKB.
17P63159    215   HMGB1_RAT High mobility group protein B1 OS=R...1650.0000001     52.8     26     47GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005737; C:cytoplasm; IDA:RGD.::GO:0005615; C:extracellular space; IDA:RGD.::GO:0005634; C:nucleus; IDA:RGD.
GO:0008097; F:5S rRNA binding; IDA:RGD.::GO:0003681; F:bent DNA binding; IDA:MGI.::GO:0000402; F:crossed form four-way junction DNA binding; IDA:MGI.::GO:0005125; F:cytokine activity; IDA:UniProtKB.::GO:0008301; F:DNA binding, bending; IDA:RGD.::GO:0003690; F:double-stranded DNA binding; IDA:RGD.::GO:0051861; F:glycolipid binding; IDA:RGD.::GO:0008201; F:heparin binding; IDA:RGD.::GO:0000401; F:open form four-way junction DNA binding; IDA:MGI.::GO:0042277; F:peptide binding; IDA:RGD.::GO:0046983; F:protein dimerization activity; IDA:RGD.::GO:0050786; F:RAGE receptor binding; IPI:UniProtKB.::GO:0003697; F:single-stranded DNA binding; IDA:RGD.::GO:0008134; F:transcription factor binding; IDA:RGD.
GO:0031532; P:actin cytoskeleton reorganization; IMP:RGD.::GO:0000902; P:cell morphogenesis; IMP:RGD.::GO:0071347; P:cellular response to interleukin-1; IEP:RGD.::GO:0006935; P:chemotaxis; IDA:RGD.::GO:0007623; P:circadian rhythm; IEP:RGD.::GO:0032392; P:DNA geometric change; IDA:MGI.::GO:0050930; P:induction of positive chemotaxis; IDA:MGI.::GO:0050831; P:male-specific defense response to bacterium; IDA:RGD.::GO:0051450; P:myoblast proliferation; IMP:RGD.::GO:0008156; P:negative regulation of DNA replication; IDA:RGD.::GO:0031175; P:neuron projection development; IGI:UniProtKB.::GO:0002053; P:positive regulation of mesenchymal cell proliferation; IDA:MGI.::GO:0045931; P:positive regulation of mitotic cell cycle; IDA:MGI.::GO:0033034; P:positive regulation of myeloid cell apoptotic process; IDA:RGD.::GO:0045663; P:positive regulation of myoblast differentiation; IMP:RGD.::GO:0010976; P:positive regulation of neuron projection development; IMP:RGD.::GO:0014911; P:positive regulation of smooth muscle cell migration; IMP:RGD.::GO:0050727; P:regulation of inflammatory response; IDA:RGD.::GO:0042493; P:response to drug; IEP:RGD.::GO:0009749; P:response to glucose stimulus; IEP:RGD.::GO:0009408; P:response to heat; IEP:RGD.::GO:0032868; P:response to insulin stimulus; IEP:RGD.::GO:0034341; P:response to interferon-gamma; IMP:RGD.::GO:0032496; P:response to lipopolysaccharide; IEP:RGD.
18A9RA84    215   HMGB1_PAPAN High mobility group protein B1 OS...1650.0000001     52.8     26     47GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
19P63158    215   HMGB1_MOUSE High mobility group protein B1 OS...1650.0000001     52.8     26     47GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005737; C:cytoplasm; IDA:MGI.::GO:0005615; C:extracellular space; IDA:MGI.::GO:0043005; C:neuron projection; IDA:MGI.::GO:0005634; C:nucleus; IDA:MGI.::GO:0005625; C:soluble fraction; IDA:MGI.
GO:0010858; F:calcium-dependent protein kinase regulator activity; IDA:MGI.::GO:0005125; F:cytokine activity; IDA:MGI.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008201; F:heparin binding; IEA:UniProtKB-KW.::GO:0001786; F:phosphatidylserine binding; TAS:BHF-UCL.::GO:0030295; F:protein kinase activator activity; IDA:MGI.
GO:0001654; P:eye development; IMP:MGI.::GO:0006954; P:inflammatory response; TAS:BHF-UCL.::GO:0030324; P:lung development; IMP:MGI.::GO:2000426; P:negative regulation of apoptotic cell clearance; IDA:BHF-UCL.::GO:0045819; P:positive regulation of glycogen catabolic process; IMP:MGI.::GO:0045639; P:positive regulation of myeloid cell differentiation; IDA:MGI.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IMP:MGI.::GO:0051384; P:response to glucocorticoid stimulus; IMP:MGI.
20Q4R844    215   HMGB1_MACFA High mobility group protein B1 OS...1650.0000001     52.8     26     47GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
21P09429    215   HMGB1_HUMAN High mobility group protein B1 OS...1650.0000001     52.8     26     47GO:0009986; C:cell surface; IDA:UniProtKB.::GO:0000793; C:condensed chromosome; IDA:UniProtKB.::GO:0005615; C:extracellular space; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0042056; F:chemoattractant activity; ISS:UniProtKB.::GO:0005125; F:cytokine activity; ISS:UniProtKB.::GO:0003684; F:damaged DNA binding; ISS:UniProtKB.::GO:0008301; F:DNA binding, bending; IMP:UniProtKB.::GO:0003690; F:double-stranded DNA binding; ISS:UniProtKB.::GO:0050786; F:RAGE receptor binding; ISS:UniProtKB.::GO:0070491; F:repressing transcription factor binding; IPI:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; ISS:UniProtKB.
GO:0006288; P:base-excision repair, DNA ligation; IDA:UniProtKB.::GO:0002407; P:dendritic cell chemotaxis; ISS:UniProtKB.::GO:0006309; P:DNA fragmentation involved in apoptotic nuclear change; TAS:Reactome.::GO:0006265; P:DNA topological change; ISS:UniProtKB.::GO:0002437; P:inflammatory response to antigenic stimulus; IEP:UniProtKB.::GO:0045087; P:innate immune response; TAS:Reactome.::GO:0001773; P:myeloid dendritic cell activation; ISS:UniProtKB.::GO:0017055; P:negative regulation of RNA polymerase II transcriptional preinitiation complex assembly; IDA:UniProtKB.::GO:0031175; P:neuron projection development; ISS:UniProtKB.::GO:0043065; P:positive regulation of apoptotic process; IDA:UniProtKB.::GO:0043280; P:positive regulation of cysteine-type endopeptidase activity involved in apoptotic process; IDA:UniProtKB.::GO:0043388; P:positive regulation of DNA binding; IDA:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.::GO:0033151; P:V(D)J recombination; IDA:UniProtKB.
22Q08IE6    215   HMGB1_HORSE High mobility group protein B1 OS...1650.0000001     52.8     26     47GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
23Q6YKA4    215   HMGB1_CANFA High mobility group protein B1 OS...1650.0000001     52.8     26     47
24B1MTB0    215   HMGB1_CALMO High mobility group protein B1 OS...1650.0000001     52.8     26     47GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
25B0CM99    215   HMGB1_CALJA High mobility group protein B1 OS...1650.0000001     52.8     26     47GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
26P10103    215   HMGB1_BOVIN High mobility group protein B1 OS...1650.0000001     52.8     26     47GO:0000793; C:condensed chromosome; ISS:AgBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0042056; F:chemoattractant activity; IDA:UniProtKB.::GO:0003684; F:damaged DNA binding; IDA:UniProtKB.::GO:0008301; F:DNA binding, bending; IDA:UniProtKB.::GO:0003690; F:double-stranded DNA binding; IDA:UniProtKB.::GO:0042393; F:histone binding; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; IDA:UniProtKB.
GO:0006288; P:base-excision repair, DNA ligation; ISS:AgBase.::GO:0006338; P:chromatin remodeling; NAS:UniProtKB.::GO:0002407; P:dendritic cell chemotaxis; IDA:UniProtKB.::GO:0006265; P:DNA topological change; IDA:UniProtKB.::GO:0001773; P:myeloid dendritic cell activation; IDA:UniProtKB.::GO:0017055; P:negative regulation of RNA polymerase II transcriptional preinitiation complex assembly; ISS:AgBase.::GO:0033151; P:V(D)J recombination; IDA:UniProtKB.
27Q3USZ2    394   UBFL1_MOUSE Upstream-binding factor 1-like pr...750.007     39.7     27     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
28Q32L31    200   HMGB3_BOVIN High mobility group protein B3 OS...650.000001     50.1     35     55GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0008301; F:DNA binding, bending; IDA:UniProtKB.::GO:0003690; F:double-stranded DNA binding; IDA:UniProtKB.
GO:0006310; P:DNA recombination; IDA:UniProtKB.
29Q05783    112   HMGD_DROME High mobility group protein D OS=D...690.0000003     50.1     36     59GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003680; F:AT DNA binding; IDA:FlyBase.::GO:0008301; F:DNA binding, bending; IDA:FlyBase.
GO:0006325; P:chromatin organization; IDA:FlyBase.::GO:0048813; P:dendrite morphogenesis; IMP:FlyBase.::GO:0007517; P:muscle organ development; IMP:FlyBase.
30P27347    157   MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea ...700.017     37.7     34     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
31O54879    200   HMGB3_MOUSE High mobility group protein B3 OS...1500.0000008     50.4     25     47GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:MGI.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0045578; P:negative regulation of B cell differentiation; IDA:MGI.::GO:0045638; P:negative regulation of myeloid cell differentiation; IDA:MGI.
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