Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR072W
Length:
183
Number of sequences:
5887
Description:
YMR072W ABF2 SGDID:S000004676, Chr XIII from 411569-412120, Genome Release 64-1-1, Verified ORF, "Mitochondrial DNA-binding protein involved in mitochondrial DNA replication and recombination, member of HMG1 DNA-binding protein family; activity may be regulated by protein kinase A phosphorylation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31O54879    200   HMGB3_MOUSE High mobility group protein B3 OS...1500.0000008     50.4     25     47GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:MGI.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0045578; P:negative regulation of B cell differentiation; IDA:MGI.::GO:0045638; P:negative regulation of myeloid cell differentiation; IDA:MGI.
32Q196Z2    201   VF401_IIV3 High mobility group protein homolo...1270.0000004     51.2     27     43GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
33Q8LDF9    241   HMGB7_ARATH High mobility group B protein 7 O...620.19     35.4     31     50GO:0005634; C:nucleus; IDA:TAIR.
GO:0003677; F:DNA binding; IDA:TAIR.
34Q9T012    446   HMG13_ARATH High mobility group B protein 13 ...1970.00002     47.4     24     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
35P07156    180   HMGB1_CRIGR High mobility group protein B1 OS...1270.0003     43.1     26     45GO:0000793; C:condensed chromosome; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006288; P:base-excision repair, DNA ligation; ISS:UniProtKB.::GO:0017055; P:negative regulation of RNA polymerase II transcriptional preinitiation complex assembly; ISS:UniProtKB.
36P40619    144   HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil...890.017     37.7     33     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
37P17741    210   HMGB2_PIG High mobility group protein B2 OS=S...640.00001     47.4     38     55GO:0000793; C:condensed chromosome; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; ISS:UniProtKB.
GO:0008301; F:DNA binding, bending; IDA:UniProtKB.
GO:0006288; P:base-excision repair, DNA ligation; ISS:UniProtKB.::GO:0006265; P:DNA topological change; IDA:UniProtKB.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.
38Q04931    709   SSRP1_RAT FACT complex subunit SSRP1 OS=Rattu...700.027     38.1     29     54GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; NAS:RGD.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
39P40620    149   HMGL_VICFA HMG1/2-like protein OS=Vicia faba ...700.072     36.2     31     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
40Q08943    708   SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus...700.026     38.5     29     54GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
41P26583    209   HMGB2_HUMAN High mobility group protein B2 OS...630.00001     47.4     38     56GO:0000793; C:condensed chromosome; IDA:UniProtKB.::GO:0005615; C:extracellular space; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0048471; C:perinuclear region of cytoplasm; IDA:UniProtKB.::GO:0043234; C:protein complex; IDA:UniProtKB.
GO:0042056; F:chemoattractant activity; IDA:UniProtKB.::GO:0003684; F:damaged DNA binding; IDA:UniProtKB.::GO:0008301; F:DNA binding, bending; IDA:UniProtKB.::GO:0003690; F:double-stranded DNA binding; ISS:UniProtKB.::GO:0050786; F:RAGE receptor binding; IGI:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; ISS:UniProtKB.::GO:0044212; F:transcription regulatory region DNA binding; IDA:UniProtKB.
GO:0006288; P:base-excision repair, DNA ligation; IDA:UniProtKB.::GO:0060326; P:cell chemotaxis; IDA:UniProtKB.::GO:0071222; P:cellular response to lipopolysaccharide; IEP:UniProtKB.::GO:0006309; P:DNA fragmentation involved in apoptotic nuclear change; TAS:Reactome.::GO:0006265; P:DNA topological change; ISS:UniProtKB.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IDA:BHF-UCL.::GO:0006334; P:nucleosome assembly; NAS:UniProtKB.::GO:0048015; P:phosphatidylinositol-mediated signaling; NAS:UniProtKB.::GO:0043388; P:positive regulation of DNA binding; IDA:UniProtKB.::GO:0001938; P:positive regulation of endothelial cell proliferation; IDA:UniProtKB.::GO:0045648; P:positive regulation of erythrocyte differentiation; IMP:UniProtKB.::GO:0045654; P:positive regulation of megakaryocyte differentiation; IMP:UniProtKB.::GO:0032075; P:positive regulation of nuclease activity; IDA:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.::GO:0033151; P:V(D)J recombination; ISS:UniProtKB.
42P40673    209   HMGB2_BOVIN High mobility group protein B2 OS...630.00001     47.4     38     56GO:0000793; C:condensed chromosome; ISS:AgBase.::GO:0048471; C:perinuclear region of cytoplasm; ISS:AgBase.
GO:0003684; F:damaged DNA binding; IDA:UniProtKB.::GO:0008301; F:DNA binding, bending; IDA:UniProtKB.::GO:0003690; F:double-stranded DNA binding; IDA:UniProtKB.::GO:0042393; F:histone binding; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; IDA:UniProtKB.
GO:0006288; P:base-excision repair, DNA ligation; ISS:AgBase.::GO:0006338; P:chromatin remodeling; NAS:UniProtKB.::GO:0006265; P:DNA topological change; IDA:UniProtKB.::GO:0033151; P:V(D)J recombination; IDA:UniProtKB.
43P26585    152   HMGL_SOYBN HMG1/2-like protein OS=Glycine max...701.3     32.3     29     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
44Q42344    138   HMGB4_ARATH High mobility group B protein 4 O...730.000002     48.1     34     62GO:0000785; C:chromatin; TAS:TAIR.::GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0003682; F:chromatin binding; TAS:TAIR.::GO:0003677; F:DNA binding; IDA:TAIR.::GO:0030527; F:structural constituent of chromatin; TAS:TAIR.
GO:0006333; P:chromatin assembly or disassembly; TAS:TAIR.
45P52925    210   HMGB2_RAT High mobility group protein B2 OS=R...630.00001     47.4     38     56GO:0000793; C:condensed chromosome; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; ISS:UniProtKB.::GO:0005625; C:soluble fraction; IDA:RGD.
GO:0008301; F:DNA binding, bending; ISS:UniProtKB.::GO:0003690; F:double-stranded DNA binding; TAS:RGD.::GO:0008289; F:lipid binding; IDA:RGD.::GO:0031493; F:nucleosomal histone binding; IDA:RGD.
GO:0006288; P:base-excision repair, DNA ligation; ISS:UniProtKB.::GO:0007049; P:cell cycle; IEP:RGD.::GO:0007399; P:nervous system development; IDA:RGD.::GO:0031100; P:organ regeneration; IEP:RGD.::GO:0051054; P:positive regulation of DNA metabolic process; IMP:RGD.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IMP:RGD.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.
46O49595    178   HMGB1_ARATH High mobility group B protein 1 O...640.000003     48.5     38     61GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
47P40625    99   HMG_TETPY High mobility group protein OS=Tetr...770.14     34.3     29     51GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
48Q5B995    106   NHP6_EMENI Non-histone chromosomal protein 6 ...421.4     31.6     33     64GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
49Q6F2F0    376   S17B3_XENTR Transcription factor Sox-17-beta....650.23     35.4     26     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0007369; P:gastrulation; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0016055; P:Wnt receptor signaling pathway; IEA:UniProtKB-KW.
50P40618    202   HMGB3_CHICK High mobility group protein B3 OS...1500.000006     48.1     25     46GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
51Q08945    709   SSRP1_HUMAN FACT complex subunit SSRP1 OS=Hom...700.074     37     27     54GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003677; F:DNA binding; TAS:ProtInc.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome.
52P25976    765   UBF1_MOUSE Nucleolar transcription factor 1 O...500.003     41.2     36     58GO:0005730; C:nucleolus; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0045943; P:positive regulation of transcription from RNA polymerase I promoter; IDA:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
53P26586    271   HMGL_TRYBR High mobility group protein homolo...1330.000007     48.5     26     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
54P25977    764   UBF1_RAT Nucleolar transcription factor 1 OS=...500.002     41.2     36     58GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0045943; P:positive regulation of transcription from RNA polymerase I promoter; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
55P30681    210   HMGB2_MOUSE High mobility group protein B2 OS...630.0003     43.1     37     56GO:0000793; C:condensed chromosome; ISS:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; ISS:UniProtKB.
GO:0008301; F:DNA binding, bending; ISS:UniProtKB.::GO:0019904; F:protein domain specific binding; IPI:MGI.
GO:0006288; P:base-excision repair, DNA ligation; ISS:UniProtKB.::GO:0008584; P:male gonad development; IMP:MGI.::GO:0043388; P:positive regulation of DNA binding; IDA:MGI.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IMP:MGI.::GO:0048545; P:response to steroid hormone stimulus; IMP:MGI.::GO:0007289; P:spermatid nucleus differentiation; IMP:MGI.
56P17480    764   UBF1_HUMAN Nucleolar transcription factor 1 O...500.002     41.6     36     58GO:0005730; C:nucleolus; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0045943; P:positive regulation of transcription from RNA polymerase I promoter; ISS:UniProtKB.::GO:0006363; P:termination of RNA polymerase I transcription; TAS:Reactome.::GO:0006362; P:transcription elongation from RNA polymerase I promoter; TAS:Reactome.::GO:0006361; P:transcription initiation from RNA polymerase I promoter; TAS:Reactome.
57Q04678    706   SSRP1_CHICK FACT complex subunit SSRP1 OS=Gal...700.093     36.6     27     57GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
58P36194    201   HMGB1_CHICK High mobility group protein B1 OS...1500.0001     44.3     25     46GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
59P11873    100   HMGC_TETTH High mobility group protein C OS=T...730.13     34.3     27     49GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
60P40623    110   HMG1B_CHITE Mobility group protein 1B OS=Chir...709.5     29.3     29     47GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
61P0C6E5    187   HMG3M_HUMAN Putative high mobility group prot...1400.00004     45.4     26     51GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
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