Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR061W
Length:
677
Number of sequences:
5887
Description:
YMR061W RNA14 SGDID:S000004665, Chr XIII from 392755-394788, Genome Release 64-1-1, Verified ORF, "Cleavage and polyadenylation factor I (CF I) component; involved in cleavage and polyadenylation of mRNA 3' ends; bridges interaction between Rna15p and Hrp1p in the CF I complex; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; required for gene looping"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P25298    677   RNA14_YEAST mRNA 3'-end-processing protein RN...6770     1395     100     100GO:0005739; C:mitochondrion; IDA:SGD.::GO:0005849; C:mRNA cleavage factor complex; IPI:SGD.
GO:0046982; F:protein heterodimerization activity; IPI:SGD.
GO:0006379; P:mRNA cleavage; IDA:SGD.::GO:0006378; P:mRNA polyadenylation; IDA:SGD.
2Q6FU45    646   RNA14_CANGA mRNA 3'-end-processing protein RN...6400     801     61     77GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
3Q759Y6    661   RNA14_ASHGO mRNA 3'-end-processing protein RN...6470     688     51     71GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
4Q6CII8    661   RNA14_KLULA mRNA 3'-end-processing protein RN...6760     610     47     67GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
5Q6BJD8    740   RNA14_DEBHA mRNA 3'-end-processing protein RN...7723e-94     313     30     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
6O14233    733   RNA14_SCHPO mRNA 3'-end-processing protein rn...6724e-84     286     28     50GO:0005739; C:mitochondrion; ISS:PomBase.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:PomBase.
GO:0005488; F:binding; IEA:InterPro.
GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0006378; P:mRNA polyadenylation; ISS:PomBase.
7Q6C8L8    806   RNA14_YARLI mRNA 3'-end-processing protein RN...6471e-81     281     29     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
8Q4WXX4    1029   RNA14_ASPFU mRNA 3'-end-processing protein rn...7831e-79     278     29     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
9Q2UKV8    1078   RNA14_ASPOR mRNA 3'-end-processing protein rn...7866e-75     266     28     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
10Q5B3I8    1075   RNA14_EMENI mRNA 3'-end-processing protein rn...7848e-73     259     27     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
11P0CO12    1064   RNA14_CRYNJ mRNA 3'-end-processing protein RN...6272e-66     240     27     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
12P0CO13    1064   RNA14_CRYNB mRNA 3'-end-processing protein RN...6272e-66     240     27     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
13Q4PCV8    945   RNA14_USTMA mRNA 3'-end-processing protein RN...7426e-65     236     25     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
14Q7S1Y0    1167   RNA14_NEUCR mRNA 3'-end-processing protein rn...6415e-64     234     28     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
15Q5AM44    791   RNA14_CANAL mRNA 3'-end-processing protein RN...1964e-17     89.4     30     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
16Q99LI7    717   CSTF3_MOUSE Cleavage stimulation factor subun...5551e-57     213     28     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
17Q5RDW9    717   CSTF3_PONAB Cleavage stimulation factor subun...5341e-57     212     28     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
18Q4IR09    997   RNA14_GIBZE mRNA 3'-end-processing protein RN...6102e-57     214     27     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
19Q12996    717   CSTF3_HUMAN Cleavage stimulation factor subun...5342e-57     211     28     50GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0006379; P:mRNA cleavage; TAS:ProtInc.::GO:0006378; P:mRNA polyadenylation; TAS:ProtInc.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
20P25991    765   SUF_DROME Protein suppressor of forked OS=Dro...5545e-48     184     26     49GO:0005848; C:mRNA cleavage stimulating factor complex; ISS:FlyBase.
GO:0006379; P:mRNA cleavage; ISS:FlyBase.
21Q1JPZ7    752   PRP39_DANRE Pre-mRNA-processing factor 39 OS=...1135.6     33.9     24     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
22Q7KRW8    1066   PRP39_DROME Pre-mRNA-processing factor 39 OS=...1870.003     44.7     21     43GO:0005685; C:U1 snRNP; ISS:FlyBase.
GO:0031072; F:heat shock protein binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
23O74970    612   PRP39_SCHPO Pre-mRNA-processing factor 39 OS=...3650.006     43.5     20     38GO:0000243; C:commitment complex; ISS:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:PomBase.
24Q8K2Z2    665   PRP39_MOUSE Pre-mRNA-processing factor 39 OS=...1950.02     42     22     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
25Q86UA1    669   PRP39_HUMAN Pre-mRNA-processing factor 39 OS=...1950.036     40.8     22     41GO:0005634; C:nucleus; IDA:HPA.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
26Q9JLI8    962   SART3_MOUSE Squamous cell carcinoma antigen r...1890.54     37.4     20     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
27P14618    531   KPYM_HUMAN Pyruvate kinase isozymes M1/M2 OS=...620.96     36.2     35     58GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005829; C:cytosol; NAS:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.::GO:0005886; C:plasma membrane; IDA:HPA.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0000287; F:magnesium ion binding; IEA:InterPro.::GO:0030955; F:potassium ion binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004743; F:pyruvate kinase activity; IEA:InterPro.
GO:0006096; P:glycolysis; IEA:UniProtKB-KW.::GO:0012501; P:programmed cell death; IDA:UniProtKB.
28Q9USY2    1014   YOW4_SCHPO Uncharacterized RNA-binding protei...1841     36.2     22     41GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; ISS:PomBase.
GO:0000244; P:assembly of spliceosomal tri-snRNP; ISS:PomBase.::GO:0000245; P:spliceosomal complex assembly; ISS:PomBase.
29P11979    531   KPYM_FELCA Pyruvate kinase isozyme M1 OS=Feli...621.1     36.2     35     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0000287; F:magnesium ion binding; IEA:InterPro.::GO:0030955; F:potassium ion binding; IEA:InterPro.::GO:0004743; F:pyruvate kinase activity; IEA:EC.
GO:0006096; P:glycolysis; IEA:UniProtKB-KW.
30P52480    531   KPYM_MOUSE Pyruvate kinase isozymes M1/M2 OS=...621.2     35.8     35     58GO:0019861; C:flagellum; IDA:MGI.::GO:0005739; C:mitochondrion; IDA:MGI.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0000287; F:magnesium ion binding; IEA:InterPro.::GO:0030955; F:potassium ion binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0004743; F:pyruvate kinase activity; IDA:MGI.
GO:0006096; P:glycolysis; IDA:MGI.
31Q15020    963   SART3_HUMAN Squamous cell carcinoma antigen r...1891.3     36.2     20     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
records
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