Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR045C
Length:
1755
Number of sequences:
5887
Description:
YMR045C YMR045C SGDID:S000004648, Chr XIII from 361321-357359,362627-361323, Genome Release 64-1-1, reverse complement, transposable_element_gene, "Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61P0CX74    440   YJ11A_YEAST Transposon Ty1-JR1 Gag polyprotei...4350     695     79     85GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
62P0C2I8    440   YL14A_YEAST Transposon Ty1-LR4 Gag polyprotei...4350     692     79     85GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
63Q12085    440   YG11A_YEAST Transposon Ty1-GR1 Gag polyprotei...4350     692     79     85GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
64Q12485    440   YG12A_YEAST Transposon Ty1-GR2 Gag polyprotei...4350     689     78     85GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
65Q92392    440   YO11A_YEAST Transposon Ty1-OL Gag polyprotein...4350     687     78     85GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
66Q12470    440   YN12A_YEAST Transposon Ty1-NL2 Gag polyprotei...4380     686     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
67Q04706    440   YM11A_YEAST Transposon Ty1-ML1 Gag polyprotei...4380     684     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
68P0CX69    440   YM14A_YEAST Transposon Ty1-MR2 Gag polyprotei...4380     684     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
69P0CX68    440   YL11A_YEAST Transposon Ty1-LR1 Gag polyprotei...4380     684     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
70P0CX67    440   YG13A_YEAST Transposon Ty1-GR3 Gag polyprotei...4380     684     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
71P0CX66    440   YE12A_YEAST Transposon Ty1-ER2 Gag polyprotei...4380     684     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
72P0CX65    440   YD14A_YEAST Transposon Ty1-DR5 Gag polyprotei...4380     684     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
73Q03856    440   YD11A_YEAST Transposon Ty1-DR1 Gag polyprotei...4350     682     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
74P0CX60    440   YP13A_YEAST Transposon Ty1-PR2 Gag polyprotei...4380     681     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
75P0CX59    440   YO12A_YEAST Transposon Ty1-OR Gag polyprotein...4380     681     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
76Q12217    440   YB12A_YEAST Transposon Ty1-BR Gag polyprotein...4380     679     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
77Q12441    440   YD12A_YEAST Transposon Ty1-DR3 Gag polyprotei...4380     676     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
78P0C2I4    478   YH11A_YEAST Transposon Ty1-H Gag polyprotein ...4760     664     71     77GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
79Q12439    438   YO21A_YEAST Transposon Ty2-OR1 Gag polyprotei...4352e-109     361     47     62GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
80Q12392    438   YD21A_YEAST Transposon Ty2-DR1 Gag polyprotei...4355e-108     357     46     62GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
81Q12260    438   YB21A_YEAST Transposon Ty2-B Gag polyprotein ...4352e-106     352     46     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
82P25383    438   YC21A_YEAST Transposon Ty2-C Gag polyprotein ...4352e-106     352     46     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:InterPro.
83P0C2J6    438   YL22A_YEAST Transposon Ty2-LR2 Gag polyprotei...4354e-106     352     46     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
84Q99303    438   YD23A_YEAST Transposon Ty2-DR3 Gag polyprotei...4352e-105     350     46     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
85Q03483    438   YD22A_YEAST Transposon Ty2-DR2 Gag polyprotei...4352e-105     350     46     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
86Q12293    438   YO22A_YEAST Transposon Ty2-OR2 Gag polyprotei...4359e-105     348     46     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
87P0CX62    438   YG22A_YEAST Transposon Ty2-GR2 Gag polyprotei...4351e-104     347     46     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
88P0CX61    438   YF21A_YEAST Transposon Ty2-F Gag polyprotein ...4351e-104     347     46     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
89P0C2J4    438   YL21A_YEAST Transposon Ty2-LR1 Gag polyprotei...4351e-104     347     46     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
90P0C2J2    438   YG21A_YEAST Transposon Ty2-GR1 Gag polyprotei...4352e-104     347     46     60GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
91P0C2J7    1802   YH41B_YEAST Transposon Ty4-H Gag-Pol polyprot...2958e-32     140     31     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004190; F:aspartic-type endopeptidase activity; IEA:UniProtKB-KW.::GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0004523; F:ribonuclease H activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0015074; P:DNA integration; IEA:UniProtKB-KW.::GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0032196; P:transposition; IEA:UniProtKB-KW.::GO:0046797; P:viral procapsid maturation; IEA:UniProtKB-KW.
records
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