Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YMR039C
Length:
292
Number of sequences:
5887
Description:
YMR039C SUB1 SGDID:S000004642, Chr XIII from 349522-348644, Genome Release 64-1-1, reverse complement, Verified ORF, "Transcriptional coactivator, facilitates elongation through factors that modify RNAP II; role in peroxide resistance involving Rad2p; role in the hyperosmotic stress response through polymerase recruitment at RNAP II and RNAP III genes"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P54000    292   SUB1_YEAST RNA polymerase II transcriptional ...2920     582     100     100GO:0005634; C:nucleus; IC:SGD.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003713; F:transcription coactivator activity; IPI:SGD.
GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IMP:SGD.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IGI:SGD.::GO:0045945; P:positive regulation of transcription from RNA polymerase III promoter; IMP:SGD.::GO:0043618; P:regulation of transcription from RNA polymerase II promoter in response to stress; IDA:SGD.::GO:0070898; P:RNA polymerase III transcriptional preinitiation complex assembly; IDA:SGD.::GO:0006369; P:termination of RNA polymerase II transcription; IGI:SGD.
2P11031    127   TCP4_MOUSE Activated RNA polymerase II transc...680.00000000000006     70.9     50     74
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
3Q63396    127   TCP4_RAT Activated RNA polymerase II transcri...680.00000000000008     70.5     50     74
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
4Q5ZK63    126   TCP4_CHICK Activated RNA polymerase II transc...660.0000000000001     69.7     48     74GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003713; F:transcription coactivator activity; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
5Q5R6D0    127   TCP4_PONAB Activated RNA polymerase II transc...680.0000000000004     68.6     49     72
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
6Q4R947    127   TCP4_MACFA Activated RNA polymerase II transc...680.0000000000004     68.6     49     72GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003713; F:transcription coactivator activity; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
7P53999    127   TCP4_HUMAN Activated RNA polymerase II transc...680.0000000000004     68.6     49     72GO:0005730; C:nucleolus; IDA:HPA.::GO:0005667; C:transcription factor complex; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003697; F:single-stranded DNA binding; IDA:UniProtKB.::GO:0003713; F:transcription coactivator activity; IDA:UniProtKB.
GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
8Q872F4    172   TCP4_NEUCR Putative RNA polymerase II transcr...690.000000001     59.7     42     62GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003713; F:transcription coactivator activity; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
9O65154    107   KIWI_ARATH RNA polymerase II transcriptional ...670.00000001     56.2     42     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003713; F:transcription coactivator activity; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
10Q94045    124   TCP4_CAEEL Putative RNA polymerase II transcr...450.00003     46.2     40     69GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003713; F:transcription coactivator activity; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
11P87294    136   TCP4_SCHPO Putative RNA polymerase II transcr...1130.00008     45.1     34     50GO:0005634; C:nucleus; IDA:PomBase.
GO:0003690; F:double-stranded DNA binding; IDA:PomBase.::GO:0003697; F:single-stranded DNA binding; IDA:PomBase.::GO:0003713; F:transcription coactivator activity; IDA:PomBase.
GO:0060261; P:positive regulation of transcription initiation from RNA polymerase II promoter; IDA:PomBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
12O65155    165   KELP_ARATH RNA polymerase II transcriptional ...690.0005     43.5     35     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003713; F:transcription coactivator activity; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
13Q9VLR5    110   TCP4_DROME RNA polymerase II transcriptional ...460.004     40     41     65GO:0005634; C:nucleus; IDA:FlyBase.
GO:0003697; F:single-stranded DNA binding; IDA:FlyBase.::GO:0003713; F:transcription coactivator activity; IEA:InterPro.
GO:0045892; P:negative regulation of transcription, DNA-dependent; IDA:FlyBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
14P07293    1873   CAC1S_RABIT Voltage-dependent L-type calcium ...700.51     35.8     33     53GO:0005891; C:voltage-gated calcium channel complex; IEA:InterPro.
GO:0005245; F:voltage-gated calcium channel activity; IEA:InterPro.
15Q13698    1873   CAC1S_HUMAN Voltage-dependent L-type calcium ...730.56     35.8     32     52GO:0031674; C:I band; IDA:UniProtKB.::GO:0030315; C:T-tubule; IDA:UniProtKB.::GO:0005891; C:voltage-gated calcium channel complex; IDA:UniProtKB.
GO:0008331; F:high voltage-gated calcium channel activity; IDA:UniProtKB.
GO:0007411; P:axon guidance; TAS:Reactome.
16P03186    3149   DEN_EBVB9 Deneddylase BPLF1 OS=Epstein-Barr v...1091.4     34.3     24     52GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell.::GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.::GO:0019033; C:viral tegument; IEA:UniProtKB-SubCell.
GO:0008234; F:cysteine-type peptidase activity; IEA:UniProtKB-KW.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
17Q6GH60    1009   SBCC_STAAR Nuclease sbcCD subunit C OS=Staphy...882.9     33.1     30     53
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
18Q9C0J8    1336   WDR33_HUMAN pre-mRNA 3' end processing protei...1623.6     33.1     27     43GO:0005581; C:collagen; IEA:UniProtKB-KW.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006301; P:postreplication repair; NAS:UniProtKB.::GO:0007283; P:spermatogenesis; NAS:UniProtKB.
19Q8K4P0    1330   WDR33_MOUSE pre-mRNA 3' end processing protei...1624.9     32.7     25     42GO:0005581; C:collagen; IEA:UniProtKB-KW.::GO:0005634; C:nucleus; IDA:MGI.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
20B3EGW3    328   RPOA_CHLL2 DNA-directed RNA polymerase subuni...627.2     31.6     37     45
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
21A1BJ07    327   RPOA_CHLPD DNA-directed RNA polymerase subuni...628.9     31.6     37     45
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
22Q8U1I5    78   Y1222_PYRFU Putative antitoxin PF1222 OS=Pyro...549.6     29.3     33     63
records
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