Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YML098W
Length:
167
Number of sequences:
5887
Description:
YML098W TAF13 SGDID:S000004564, Chr XIII from 77267-77770, Genome Release 64-1-1, Verified ORF, "TFIID subunit (19 kDa), involved in RNA polymerase II transcription initiation, similar to histone H4 with atypical histone fold motif of Spt3-like transcription factors"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P11747    167   TAF13_YEAST Transcription initiation factor T...1675e-119     340     100     100GO:0005669; C:transcription factor TFIID complex; IDA:SGD.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0051123; P:RNA polymerase II transcriptional preinitiation complex assembly; IMP:SGD.
2O60076    111   TAF13_SCHPO Transcription initiation factor T...918e-20     84.7     44     67GO:0000785; C:chromatin; NAS:PomBase.::GO:0005669; C:transcription factor TFIID complex; ISS:PomBase.
GO:0000991; F:core RNA polymerase II binding transcription factor activity; ISS:PomBase.::GO:0003677; F:DNA binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISS:PomBase.
3Q54CN8    106   TAF13_DICDI Transcription initiation factor T...960.0000000000007     65.5     36     61GO:0005669; C:transcription factor TFIID complex; ISS:dictyBase.
GO:0003677; F:DNA binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISS:dictyBase.
4Q5R9W6    124   TAF13_PONAB Transcription initiation factor T...990.00000000006     60.5     31     58
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; IEA:InterPro.
5P61216    124   TAF13_MOUSE Transcription initiation factor T...990.00000000006     60.5     31     58
GO:0003677; F:DNA binding; IDA:MGI.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; IEA:InterPro.
6Q15543    124   TAF13_HUMAN Transcription initiation factor T...990.00000000006     60.5     31     58GO:0005730; C:nucleolus; IDA:HPA.::GO:0005669; C:transcription factor TFIID complex; IDA:UniProtKB.
GO:0008022; F:protein C-terminus binding; IPI:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; NAS:UniProtKB.
GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; IC:UniProtKB.::GO:0016032; P:viral reproduction; TAS:Reactome.
7Q148M7    124   TAF13_BOVIN Transcription initiation factor T...990.00000000006     60.5     31     58
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; IEA:InterPro.
8O14311    307   SPT3_SCHPO Protein spt3 OS=Schizosaccharomyce...1450.0002     43.9     23     47GO:0000785; C:chromatin; NAS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0000124; C:SAGA complex; IDA:PomBase.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003712; F:transcription cofactor activity; ISS:PomBase.
GO:0006338; P:chromatin remodeling; IC:PomBase.::GO:0016573; P:histone acetylation; ISS:PomBase.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:PomBase.::GO:0006366; P:transcription from RNA polymerase II promoter; IEA:InterPro.
9O75486    399   SUPT3_HUMAN Transcription initiation protein ...790.01     38.9     29     51GO:0030914; C:STAGA complex; IDA:UniProtKB.::GO:0033276; C:transcription factor TFTC complex; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003713; F:transcription coactivator activity; IDA:UniProtKB.
GO:0016578; P:histone deubiquitination; IDA:UniProtKB.::GO:0043966; P:histone H3 acetylation; IDA:UniProtKB.::GO:0045893; P:positive regulation of transcription, DNA-dependent; NAS:UniProtKB.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; TAS:ProtInc.::GO:0006366; P:transcription from RNA polymerase II promoter; TAS:ProtInc.::GO:0006352; P:transcription initiation, DNA-dependent; NAS:UniProtKB.
10Q9KJM5    1383   RPOB_BARQU DNA-directed RNA polymerase subuni...571.2     33.1     37     51
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0032549; F:ribonucleoside binding; IEA:InterPro.
11Q54S52    3080   Y2801_DICDI Protein PIEZO homolog OS=Dictyost...451.7     32.7     27     62GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
12P09642    322   TBA3_CHICK Tubulin alpha-3 chain OS=Gallus ga...1331.8     32.3     26     38GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0003924; F:GTPase activity; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0007018; P:microtubule-based movement; IEA:InterPro.::GO:0051258; P:protein polymerization; IEA:InterPro.
13D1ZRZ5    738   ACUK_SORMK Transcription activator of glucone...402.5     32     35     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000981; F:sequence-specific DNA binding RNA polymerase II transcription factor activity; IEA:InterPro.::GO:0004871; F:signal transducer activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006094; P:gluconeogenesis; IEA:UniProtKB-KW.
14A9ISG1    1383   RPOB_BART1 DNA-directed RNA polymerase subuni...572.6     32     33     53
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0032549; F:ribonucleoside binding; IEA:InterPro.
15Q57632    67   HJA1_METJA Probable archaeal histone 1 OS=JCM...453.6     29.6     29     58GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
16P34782    558   YCXA_ASTLO Uncharacterized 66.5 kDa protein i...774.2     31.2     27     49GO:0009536; C:plastid; IEA:UniProtKB-SubCell.
17A2R7P5    1201   NST1_ASPNC Stress response protein nst1 OS=As...704.6     31.2     30     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0006950; P:response to stress; IEA:UniProtKB-KW.
18Q8IBP1    3429   YPF16_PLAF7 Uncharacterized protein PF07_0086...676.1     30.8     31     48GO:0005737; C:cytoplasm; NAS:UniProtKB.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
19Q6GZN1    155   094L_FRG3G Uncharacterized protein 094L OS=Fr...546.4     30     35     54
records
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