Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YML046W
Length:
629
Number of sequences:
5887
Description:
YML046W PRP39 SGDID:S000004509, Chr XIII from 181474-183363, Genome Release 64-1-1, Verified ORF, "U1 snRNP protein involved in splicing, contains multiple tetriatricopeptide repeats"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P39682    629   PRP39_YEAST Pre-mRNA-processing factor 39 OS=...6290     1280     100     100GO:0000243; C:commitment complex; IGI:SGD.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IGI:SGD.
2O74970    612   PRP39_SCHPO Pre-mRNA-processing factor 39 OS=...5281e-34     142     23     43GO:0000243; C:commitment complex; ISS:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:PomBase.
3Q86UA1    669   PRP39_HUMAN Pre-mRNA-processing factor 39 OS=...2961e-20     100     26     43GO:0005634; C:nucleus; IDA:HPA.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
4Q1JPZ7    752   PRP39_DANRE Pre-mRNA-processing factor 39 OS=...3039e-20     97.4     26     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
5Q4KLU2    641   PRP39_XENLA Pre-mRNA-processing factor 39 OS=...2923e-19     95.5     25     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6Q8K2Z2    665   PRP39_MOUSE Pre-mRNA-processing factor 39 OS=...2962e-17     89.7     26     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
7Q7KRW8    1066   PRP39_DROME Pre-mRNA-processing factor 39 OS=...1220.000000003     63.9     30     56GO:0005685; C:U1 snRNP; ISS:FlyBase.
GO:0031072; F:heat shock protein binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
8Q03776    544   PRP42_YEAST U1 small nuclear ribonucleoprotei...2700.00000000001     71.2     24     45GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0003723; F:RNA binding; IDA:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.
9Q9JLI8    962   SART3_MOUSE Squamous cell carcinoma antigen r...4120.00001     52     21     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
10O14233    733   RNA14_SCHPO mRNA 3'-end-processing protein rn...1500.00002     51.6     27     45GO:0005739; C:mitochondrion; ISS:PomBase.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:PomBase.
GO:0005488; F:binding; IEA:InterPro.
GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0006378; P:mRNA polyadenylation; ISS:PomBase.
11Q15020    963   SART3_HUMAN Squamous cell carcinoma antigen r...4110.0007     46.6     21     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
12Q5B3I8    1075   RNA14_EMENI mRNA 3'-end-processing protein rn...1460.002     45.4     25     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
13Q12309    687   CLF1_YEAST Pre-mRNA-splicing factor CLF1 OS=S...1430.003     44.3     24     43GO:0000785; C:chromatin; IDA:SGD.::GO:0000974; C:Prp19 complex; IDA:SGD.::GO:0071006; C:U2-type catalytic step 1 spliceosome; IDA:SGD.::GO:0071007; C:U2-type catalytic step 2 spliceosome; IDA:SGD.::GO:0071008; C:U2-type post-mRNA release spliceosomal complex; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0003682; F:chromatin binding; IDA:SGD.::GO:0003688; F:DNA replication origin binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0000354; P:cis assembly of pre-catalytic spliceosome; IMP:SGD.::GO:0006270; P:DNA-dependent DNA replication initiation; IMP:SGD.
14Q9BZJ0    848   CRNL1_HUMAN Crooked neck-like protein 1 OS=Ho...2480.012     42.4     22     40GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0000245; P:spliceosomal complex assembly; IDA:UniProtKB.
15Q5BDX1    673   CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=1...1126.1     33.5     22     46GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
16P63155    690   CRNL1_RAT Crooked neck-like protein 1 OS=Ratt...2480.068     40     21     40
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB.
17P63154    690   CRNL1_MOUSE Crooked neck-like protein 1 OS=Mu...2480.068     40     21     40GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB.
18Q5REG1    981   SART3_PONAB Squamous cell carcinoma antigen r...4290.21     38.5     20     38GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
19Q6FW76    695   CLF1_CANGA Pre-mRNA-splicing factor CLF1 OS=N...1340.24     38.1     25     49GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
20P87312    674   CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=S...740.26     38.1     28     51GO:0005681; C:spliceosomal complex; IDA:PomBase.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IC:PomBase.
21Q4WT84    676   CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=A...1122     35     23     46GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
22P17886    702   CRN_DROME Protein crooked neck OS=Drosophila ...1580.56     37     23     42GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0005813; C:centrosome; IDA:FlyBase.::GO:0072686; C:mitotic spindle; IDA:FlyBase.::GO:0016607; C:nuclear speck; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.
GO:0005488; F:binding; IEA:InterPro.
GO:0008366; P:axon ensheathment; IMP:FlyBase.::GO:0051298; P:centrosome duplication; IMP:FlyBase.::GO:0008347; P:glial cell migration; IMP:FlyBase.::GO:0007443; P:Malpighian tubule morphogenesis; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.::GO:0007438; P:oenocyte development; IMP:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
23Q9CJY8    203   HFLD_PASMU High frequency lysogenization prot...790.67     35.8     29     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
24Q9USY2    1014   YOW4_SCHPO Uncharacterized RNA-binding protei...1411.3     35.8     20     46GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; ISS:PomBase.
GO:0000244; P:assembly of spliceosomal tri-snRNP; ISS:PomBase.::GO:0000245; P:spliceosomal complex assembly; ISS:PomBase.
25B0VLZ5    1397   RPOC_ACIBS DNA-directed RNA polymerase subuni...1102.1     35.4     26     50
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
26B0VDH9    1397   RPOC_ACIBY DNA-directed RNA polymerase subuni...1102.1     35.4     26     50
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
27A3M1G4    1397   RPOC_ACIBT DNA-directed RNA polymerase subuni...1102.1     35.4     26     50
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
28B2I1Z2    1397   RPOC_ACIBC DNA-directed RNA polymerase subuni...1102.1     35.4     26     50
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
29B0URI2    203   HFLD_HAES2 High frequency lysogenization prot...802.1     34.3     28     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
30Q0I588    203   HFLD_HAES1 High frequency lysogenization prot...802.1     34.3     28     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
31P59623    141   SP2AB_CLOTE Anti-sigma F factor OS=Clostridiu...1172.6     33.5     21     46
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:InterPro.::GO:0016989; F:sigma factor antagonist activity; IEA:InterPro.
GO:0045892; P:negative regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0030435; P:sporulation resulting in formation of a cellular spore; IEA:UniProtKB-KW.
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