Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR438C-A
Length:
89
Number of sequences:
5887
Description:
YLR438C-A LSM3 SGDID:S000006434, Chr XII from 1014178-1013909, Genome Release 64-1-1, reverse complement, Verified ORF, "Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P57743    89   LSM3_YEAST U6 snRNA-associated Sm-like protei...891e-58     181     100     100GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
2Q1ZXK3    97   LSM3_DICDI Probable U6 snRNA-associated Sm-li...853e-19     80.1     46     67GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
3Q9Y7M4    93   LSM3_SCHPO Probable U6 snRNA-associated Sm-li...829e-19     79     49     66GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.
4P62311    102   LSM3_MOUSE U6 snRNA-associated Sm-like protei...852e-17     75.9     44     66
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
5P62310    102   LSM3_HUMAN U6 snRNA-associated Sm-like protei...852e-17     75.9     44     66GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
6Q32PE9    102   LSM3_BOVIN U6 snRNA-associated Sm-like protei...852e-17     75.9     44     66
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
7O26745    81   RUXX_METTH Putative snRNP Sm-like protein OS=...790.0000000003     56.2     43     57GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
8Q0W8R9    72   RUXX_UNCMA Putative snRNP Sm-like protein OS=...780.0000000008     54.7     38     56GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
9O29386    77   RUXX_ARCFU Putative snRNP Sm-like protein OS=...770.000000002     53.9     40     53GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
10Q12U30    72   RUXX_METBU Putative snRNP Sm-like protein OS=...760.000000003     53.5     41     55GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
11Q8PZZ9    72   RUXX_METMA Putative snRNP Sm-like protein OS=...760.00000002     51.2     41     54GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
12Q465S1    72   RUXX_METBF Putative snRNP Sm-like protein OS=...760.00000002     50.8     41     54GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
13Q8TL47    72   RUXX_METAC Putative snRNP Sm-like protein OS=...760.00000005     49.7     39     54GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
14P57670    83   RUXX_THEAC Putative snRNP Sm-like protein OS=...800.00000008     49.7     39     54GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
15Q54RX0    85   RUXG_DICDI Probable small nuclear ribonucleop...710.0000001     48.9     41     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
16Q97BU5    83   RUXX_THEVO Putative snRNP Sm-like protein OS=...810.0000002     48.5     33     54GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
17P47017    172   LSM1_YEAST Sm-like protein LSm1 OS=Saccharomy...670.0000005     48.1     34     58GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005845; C:mRNA cap binding complex; IPI:SGD.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0000339; F:RNA cap binding; IGI:SGD.
GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; IGI:SGD.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
18O74966    77   RUXG_SCHPO Small nuclear ribonucleoprotein G ...710.0000006     47     35     59GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
19Q06217    110   SMD2_YEAST Small nuclear ribonucleoprotein Sm...670.0000006     47.4     34     55GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
20Q54W83    129   LSM1_DICDI Probable U6 snRNA-associated Sm-li...710.0000009     47     32     54GO:0000932; C:cytoplasmic mRNA processing body; ISS:dictyBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000339; F:RNA cap binding; ISS:dictyBase.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
21O74499    113   LSM7_SCHPO U6 snRNA-associated Sm-like protei...880.000002     45.8     33     53GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.::GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
22Q9VXE0    76   RUXG_DROME Probable small nuclear ribonucleop...690.000002     45.4     33     55GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; IDA:FlyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.
23Q9YEQ5    77   RUXX_AERPE Putative snRNP Sm-like protein OS=...860.000002     45.1     34     51GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
24P53905    115   LSM7_YEAST U6 snRNA-associated Sm-like protei...860.000004     44.7     34     53GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD.
GO:0030490; P:maturation of SSU-rRNA; IMP:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; IPI:SGD.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
25Q9V0Y8    75   RUXX_PYRAB Putative snRNP Sm-like protein OS=...810.000009     43.5     37     53GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW.
26Q54NC5    112   SMD2_DICDI Probable small nuclear ribonucleop...820.00001     43.9     30     52GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
27Q55A45    274   RSMB_DICDI Small nuclear ribonucleoprotein-as...760.00001     45.4     36     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
28Q9UK45    103   LSM7_HUMAN U6 snRNA-associated Sm-like protei...760.00001     43.1     34     58GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; NAS:UniProtKB.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB.
29C6A1T2    76   RUXX_THESM Putative snRNP Sm-like protein OS=...770.00002     42.7     36     52GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
30Q9CQQ8    103   LSM7_MOUSE U6 snRNA-associated Sm-like protei...760.00003     42.4     34     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
31O74016    75   RUXX_PYRHO Putative snRNP Sm-like protein OS=...810.00004     42     35     53GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
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