rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
1 | P57743 | 89 | LSM3_YEAST U6 snRNA-associated Sm-like protei... | 89 | 1e-58 | 181 | 100 | 100 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 2 | Q1ZXK3 | 97 | LSM3_DICDI Probable U6 snRNA-associated Sm-li... | 85 | 3e-19 | 80.1 | 46 | 67 | GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase. | 3 | Q9Y7M4 | 93 | LSM3_SCHPO Probable U6 snRNA-associated Sm-li... | 82 | 9e-19 | 79 | 49 | 66 | GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; ISS:PomBase. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase. | 4 | P62311 | 102 | LSM3_MOUSE U6 snRNA-associated Sm-like protei... | 85 | 2e-17 | 75.9 | 44 | 66 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 5 | P62310 | 102 | LSM3_HUMAN U6 snRNA-associated Sm-like protei... | 85 | 2e-17 | 75.9 | 44 | 66 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB. | 6 | Q32PE9 | 102 | LSM3_BOVIN U6 snRNA-associated Sm-like protei... | 85 | 2e-17 | 75.9 | 44 | 66 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 7 | O26745 | 81 | RUXX_METTH Putative snRNP Sm-like protein OS=... | 79 | 0.0000000003 | 56.2 | 43 | 57 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 8 | Q0W8R9 | 72 | RUXX_UNCMA Putative snRNP Sm-like protein OS=... | 78 | 0.0000000008 | 54.7 | 38 | 56 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 9 | O29386 | 77 | RUXX_ARCFU Putative snRNP Sm-like protein OS=... | 77 | 0.000000002 | 53.9 | 40 | 53 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 10 | Q12U30 | 72 | RUXX_METBU Putative snRNP Sm-like protein OS=... | 76 | 0.000000003 | 53.5 | 41 | 55 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 11 | Q8PZZ9 | 72 | RUXX_METMA Putative snRNP Sm-like protein OS=... | 76 | 0.00000002 | 51.2 | 41 | 54 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 12 | Q465S1 | 72 | RUXX_METBF Putative snRNP Sm-like protein OS=... | 76 | 0.00000002 | 50.8 | 41 | 54 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 13 | Q8TL47 | 72 | RUXX_METAC Putative snRNP Sm-like protein OS=... | 76 | 0.00000005 | 49.7 | 39 | 54 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 14 | P57670 | 83 | RUXX_THEAC Putative snRNP Sm-like protein OS=... | 80 | 0.00000008 | 49.7 | 39 | 54 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 15 | Q54RX0 | 85 | RUXG_DICDI Probable small nuclear ribonucleop... | 71 | 0.0000001 | 48.9 | 41 | 58 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 16 | Q97BU5 | 83 | RUXX_THEVO Putative snRNP Sm-like protein OS=... | 81 | 0.0000002 | 48.5 | 33 | 54 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 17 | P47017 | 172 | LSM1_YEAST Sm-like protein LSm1 OS=Saccharomy... | 67 | 0.0000005 | 48.1 | 34 | 58 | GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005845; C:mRNA cap binding complex; IPI:SGD.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0000339; F:RNA cap binding; IGI:SGD. | | | | | | | | | | GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; IGI:SGD.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 18 | O74966 | 77 | RUXG_SCHPO Small nuclear ribonucleoprotein G ... | 71 | 0.0000006 | 47 | 35 | 59 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase. | 19 | Q06217 | 110 | SMD2_YEAST Small nuclear ribonucleoprotein Sm... | 67 | 0.0000006 | 47.4 | 34 | 55 | GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD. | 20 | Q54W83 | 129 | LSM1_DICDI Probable U6 snRNA-associated Sm-li... | 71 | 0.0000009 | 47 | 32 | 54 | GO:0000932; C:cytoplasmic mRNA processing body; ISS:dictyBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000339; F:RNA cap binding; ISS:dictyBase. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 21 | O74499 | 113 | LSM7_SCHPO U6 snRNA-associated Sm-like protei... | 88 | 0.000002 | 45.8 | 33 | 53 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; ISS:PomBase. | | | | | | | | | | GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.::GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 22 | Q9VXE0 | 76 | RUXG_DROME Probable small nuclear ribonucleop... | 69 | 0.000002 | 45.4 | 33 | 55 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; IDA:FlyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase. | 23 | Q9YEQ5 | 77 | RUXX_AERPE Putative snRNP Sm-like protein OS=... | 86 | 0.000002 | 45.1 | 34 | 51 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 24 | P53905 | 115 | LSM7_YEAST U6 snRNA-associated Sm-like protei... | 86 | 0.000004 | 44.7 | 34 | 53 | GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD. | | | | | | | | | | GO:0030490; P:maturation of SSU-rRNA; IMP:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; IPI:SGD.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 25 | Q9V0Y8 | 75 | RUXX_PYRAB Putative snRNP Sm-like protein OS=... | 81 | 0.000009 | 43.5 | 37 | 53 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW. | | | | | | | | | | | 26 | Q54NC5 | 112 | SMD2_DICDI Probable small nuclear ribonucleop... | 82 | 0.00001 | 43.9 | 30 | 52 | GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:UniProtKB. | | | | | | | | | | | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB. | 27 | Q55A45 | 274 | RSMB_DICDI Small nuclear ribonucleoprotein-as... | 76 | 0.00001 | 45.4 | 36 | 55 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 28 | Q9UK45 | 103 | LSM7_HUMAN U6 snRNA-associated Sm-like protei... | 76 | 0.00001 | 43.1 | 34 | 58 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB. | 29 | C6A1T2 | 76 | RUXX_THESM Putative snRNP Sm-like protein OS=... | 77 | 0.00002 | 42.7 | 36 | 52 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 30 | Q9CQQ8 | 103 | LSM7_MOUSE U6 snRNA-associated Sm-like protei... | 76 | 0.00003 | 42.4 | 34 | 58 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 31 | O74016 | 75 | RUXX_PYRHO Putative snRNP Sm-like protein OS=... | 81 | 0.00004 | 42 | 35 | 53 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | |