Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR409C
Length:
939
Number of sequences:
5887
Description:
YLR409C UTP21 SGDID:S000004401, Chr XII from 937233-934414, Genome Release 64-1-1, reverse complement, Verified ORF, "Subunit of U3-containing 90S preribosome and Small Subunit (SSU) processome complexes involved in production of 18S rRNA and assembly of small ribosomal subunit; synthetic defect with STI1 Hsp90 cochaperone; human homolog linked to glaucoma"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q06078    939   UTP21_YEAST U3 small nucleolar RNA-associated...9390     1942     100     100GO:0034388; C:Pwp2p-containing subcomplex of 90S preribosome; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0042274; P:ribosomal small subunit biogenesis; IC:SGD.::GO:0006364; P:rRNA processing; IGI:SGD.
2O14053    902   YC47_SCHPO Uncharacterized WD repeat-containi...9510     650     40     59GO:0032153; C:cell division site; IDA:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; NAS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0032040; C:small-subunit processome; IEA:InterPro.::GO:0005816; C:spindle pole body; IDA:PomBase.
GO:0006364; P:rRNA processing; ISS:PomBase.
3Q8NI36    951   WDR36_HUMAN WD repeat-containing protein 36 O...8976e-136     437     32     52GO:0032040; C:small-subunit processome; IEA:InterPro.
GO:0050896; P:response to stimulus; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:InterPro.::GO:0007601; P:visual perception; IEA:UniProtKB-KW.
4Q9SJT9    1218   COPA2_ARATH Coatomer subunit alpha-2 OS=Arabi...2030.00000000008     70.1     27     44GO:0030126; C:COPI vesicle coat; IEA:InterPro.::GO:0005829; C:cytosol; IDA:TAIR.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
5Q6FJZ9    427   PRP46_CANGA Pre-mRNA-splicing factor PRP46 OS...1620.0000000001     68.2     30     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6Q0J3D9    1218   COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza...1500.0000000005     67.4     29     45GO:0030126; C:COPI vesicle coat; IEA:InterPro.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
7Q9AUR8    1218   COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza...1500.0000000006     67     29     45GO:0030126; C:COPI vesicle coat; IEA:InterPro.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
8P0CS48    473   PRP46_CRYNJ Pre-mRNA-splicing factor PRP46 OS...1620.000000002     64.3     25     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
9P0CS49    473   PRP46_CRYNB Pre-mRNA-splicing factor PRP46 OS...1620.000000003     64.3     25     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
10Q94A40    1216   COPA1_ARATH Coatomer subunit alpha-1 OS=Arabi...1500.000000004     64.7     27     45GO:0030126; C:COPI vesicle coat; IEA:InterPro.::GO:0005829; C:cytosol; IDA:TAIR.::GO:0005886; C:plasma membrane; IDA:TAIR.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
11P62884    312   GBLP_LEIIN Guanine nucleotide-binding protein...1810.000000004     62.8     24     48
12P62883    312   GBLP_LEICH Guanine nucleotide-binding protein...1810.000000004     62.8     24     48
13Q25306    312   GBLP_LEIMA Guanine nucleotide-binding protein...1810.000000006     62.4     24     48
14Q28YY2    680   WDR48_DROPS WD repeat-containing protein 48 h...1980.000000006     63.5     22     45
15B4GIJ0    680   WDR48_DROPE WD repeat-containing protein 48 h...1980.000000006     63.5     22     45
16Q1LZ08    668   WDR48_DROME WD repeat-containing protein 48 h...1750.00000001     62.8     22     44
17B4P7H8    680   WDR48_DROYA WD repeat-containing protein 48 h...1750.00000001     62.8     22     44
18B4QB64    668   WDR48_DROSI WD repeat-containing protein 48 h...1750.00000001     62.8     22     44
19B4HND9    680   WDR48_DROSE WD repeat-containing protein 48 h...1750.00000001     62.8     22     44
20B3NSK1    680   WDR48_DROER WD repeat-containing protein 48 h...1750.00000001     62.8     22     44
21B3MET8    667   WDR48_DROAN WD repeat-containing protein 48 h...1750.00000001     62.4     22     44
22Q54KL5    335   WDR5_DICDI WD repeat-containing protein 5 hom...1900.00000002     61.2     25     48GO:0035097; C:histone methyltransferase complex; ISS:dictyBase.
GO:0042393; F:histone binding; ISS:dictyBase.
GO:0051568; P:histone H3-K4 methylation; ISS:dictyBase.
23Q4WT34    453   PRP46_ASPFU Pre-mRNA-splicing factor prp46 OS...1610.00000002     61.2     26     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
24O60137    357   SWD2_SCHPO Set1 complex component swd2 OS=Sch...1200.00000002     60.8     32     48GO:0005829; C:cytosol; IDA:PomBase.::GO:0000790; C:nuclear chromatin; IC:PomBase.::GO:0048188; C:Set1C/COMPASS complex; IDA:PomBase.
GO:0006338; P:chromatin remodeling; IC:PomBase.::GO:0051568; P:histone H3-K4 methylation; IMP:PomBase.
25B4MFM2    667   WDR48_DROVI WD repeat-containing protein 48 h...1980.00000003     61.2     22     44
26O74319    642   TAF73_SCHPO Transcription initiation factor T...1650.00000003     61.2     25     45GO:0005829; C:cytosol; IDA:PomBase.::GO:0005669; C:transcription factor TFIID complex; TAS:PomBase.
GO:0000991; F:core RNA polymerase II binding transcription factor activity; IC:PomBase.
GO:0030071; P:regulation of mitotic metaphase/anaphase transition; IGI:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:PomBase.
27Q5BE22    452   PRP46_EMENI Pre-mRNA-splicing factor prp46 OS...1610.00000003     60.8     25     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
28B4KRQ4    679   WDR48_DROMO WD repeat-containing protein 48 h...1750.00000004     61.2     22     43
29B4J8H6    667   WDR48_DROGR WD repeat-containing protein 48 h...1750.00000004     60.8     22     43
30Q75BY3    425   PRP46_ASHGO Pre-mRNA-splicing factor PRP46 OS...2960.00000006     59.7     23     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
31Q54S79    942   WDR3_DICDI WD repeat-containing protein 3 hom...1750.00000008     60.1     24     43GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
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