Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR397C
Length:
780
Number of sequences:
5887
Description:
YLR397C AFG2 SGDID:S000004389, Chr XII from 914892-912550, Genome Release 64-1-1, reverse complement, Verified ORF, "ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex; is essential for pre-60S maturation and release of several preribosome maturation factors; may be involved in degradation of aberrant mRNAs"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
631A6H690    825   IQCAL_MOUSE IQ and AAA domain-containing prot...1830.003     44.7     21     44
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
632Q5SCW3    2094   YCF2_HUPLU Protein ycf2 OS=Huperzia lucidula ...2170.000006     53.9     26     42GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
633Q9NVI7    634   ATD3A_HUMAN ATPase family AAA domain-containi...1610.000002     55.1     27     50GO:0005739; C:mitochondrion; IDA:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0016049; P:cell growth; IMP:UniProtKB.::GO:0043066; P:negative regulation of apoptotic process; IMP:UniProtKB.
634Q8WHW9    2313   YCF2_PSINU Protein ycf2 OS=Psilotum nudum (Wh...2240.00002     52.4     25     44GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
635A6NCM1    817   IQCAL_HUMAN Putative IQ and AAA domain-contai...2030.0002     48.5     24     43
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
636A6H5M5    2434   YCF2_CYCTA Protein ycf2 OS=Cycas taitungensis...2280.00003     52     27     43GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
637P41653    2054   YCF2_PINTH Protein ycf2 OS=Pinus thunbergii (...1750.00006     50.4     23     47GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
638Q550C8    836   LONM2_DICDI Lon protease homolog, mitochondri...850.17     39.3     33     48GO:0042645; C:mitochondrial nucleoid; IBA:RefGenome.
GO:0005524; F:ATP binding; IBA:RefGenome.::GO:0004176; F:ATP-dependent peptidase activity; IBA:RefGenome.::GO:0070361; F:mitochondrial light strand promoter anti-sense binding; IBA:RefGenome.::GO:0004252; F:serine-type endopeptidase activity; IBA:RefGenome.::GO:0003697; F:single-stranded DNA binding; IBA:RefGenome.::GO:0003727; F:single-stranded RNA binding; IBA:RefGenome.
GO:0034599; P:cellular response to oxidative stress; IBA:RefGenome.::GO:0006515; P:misfolded or incompletely synthesized protein catabolic process; IBA:RefGenome.::GO:0007005; P:mitochondrion organization; IBA:RefGenome.::GO:0070407; P:oxidation-dependent protein catabolic process; IBA:RefGenome.::GO:0051260; P:protein homooligomerization; IBA:RefGenome.::GO:0001666; P:response to hypoxia; IBA:RefGenome.
639Q9UWR2    479   RFCL_PYRFU Replication factor C large subunit...1310.17     38.9     28     39
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
640Q58294    516   RFCL_METJA Replication factor C large subunit...2290.0007     46.6     26     44
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
641Q03YJ6    351   RUVB_LEUMM Holliday junction ATP-dependent DN...1120.12     39.3     28     38
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
642B9WEC4    1247   LONP2_CANDC Lon protease homolog 2, peroxisom...1690.96     36.6     26     43GO:0005782; C:peroxisomal matrix; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004176; F:ATP-dependent peptidase activity; IEA:InterPro.::GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro.
GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
643Q9UXF6    405   RFCL_SULSO Replication factor C large subunit...1330.009     42.7     27     44
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
644Q9CUL5    857   IQCA1_MOUSE IQ and AAA domain-containing prot...900.0004     47.8     32     51
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
645A1VRH7    421   CLPX_POLNA ATP-dependent Clp protease ATP-bin...1030.19     38.5     30     47
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro.::GO:0051082; F:unfolded protein binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006457; P:protein folding; IEA:InterPro.
646A6UWR5    474   RFCL_META3 Replication factor C large subunit...1800.042     40.8     26     42
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
647O64301    320   DPA44_BPR69 DNA polymerase accessory protein ...1656.6     33.5     27     40
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
648Q82XP4    346   RUVB_NITEU Holliday junction ATP-dependent DN...710.16     38.9     32     52
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
649Q85B60    2104   YCF2_ADICA Protein ycf2 OS=Adiantum capillus-...1510.01     43.1     27     45GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
650A3DNV8    423   RFCL_STAMF Replication factor C large subunit...940.081     39.7     27     46
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
651Q12BY1    421   CLPX_POLSJ ATP-dependent Clp protease ATP-bin...1030.052     40.4     31     48
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro.::GO:0051082; F:unfolded protein binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006457; P:protein folding; IEA:InterPro.
652A3MS27    421   RFCL_PYRCJ Replication factor C large subunit...2340.009     42.7     23     42
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
653Q85WV5    2062   YCF2_PINKO Protein ycf2 OS=Pinus koraiensis (...1730.0005     47.4     24     45GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
654Q0AJA3    346   RUVB_NITEC Holliday junction ATP-dependent DN...710.18     38.5     35     55
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
655Q5T2N8    411   ATD3C_HUMAN ATPase family AAA domain-containi...1610.0006     46.6     27     47
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
656O57853    468   RFCL_PYRHO Replication factor C large subunit...1310.17     38.9     28     39
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
657Q75JU2    876   WRIP1_DICDI ATPase WRNIP1 OS=Dictyostelium di...670.038     41.2     36     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:InterPro.::GO:0006281; P:DNA repair; IEA:InterPro.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
658Q472D2    425   CLPX_CUPPJ ATP-dependent Clp protease ATP-bin...1030.083     39.7     31     48
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro.::GO:0051082; F:unfolded protein binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006457; P:protein folding; IEA:InterPro.
659Q1LM63    425   CLPX_RALME ATP-dependent Clp protease ATP-bin...1030.079     40     31     48
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro.::GO:0051082; F:unfolded protein binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006457; P:protein folding; IEA:InterPro.
660A8MHI3    335   RUVB_ALKOO Holliday junction ATP-dependent DN...760.0006     46.6     37     51
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
661Q03ER0    337   RUVB_PEDPA Holliday junction ATP-dependent DN...1040.53     37     26     39
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
records
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