Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR336C
Length:
899
Number of sequences:
5887
Description:
YLR336C SGD1 SGDID:S000004328, Chr XII from 802396-799697, Genome Release 64-1-1, reverse complement, Verified ORF, "Essential nuclear protein, required for biogenesis of the small ribosomal subunit; has a possible role in the osmoregulatory glycerol response; putative homolog of human NOM1 which is implicated in acute myeloid leukemia"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q06132    899   SGD1_YEAST Suppressor of glycerol defect prot...8990     1825     100     100GO:0005730; C:nucleolus; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0006972; P:hyperosmotic response; IGI:SGD.::GO:0042274; P:ribosomal small subunit biogenesis; IMP:SGD.::GO:0016070; P:RNA metabolic process; IEA:InterPro.
2O13971    775   SGD1_SCHPO Suppressor of glycerol defect prot...6599e-82     286     32     52GO:0005730; C:nucleolus; IDA:PomBase.
GO:0005488; F:binding; IEA:InterPro.
GO:0042274; P:ribosomal small subunit biogenesis; ISS:PomBase.::GO:0016070; P:RNA metabolic process; IEA:InterPro.
3Q5C9Z4    860   NOM1_HUMAN Nucleolar MIF4G domain-containing ...4371e-55     210     32     51GO:0005730; C:nucleolus; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
4Q3UFM5    854   NOM1_MOUSE Nucleolar MIF4G domain-containing ...5953e-55     209     29     47GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0005488; F:binding; IEA:InterPro.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
5Q9W020    854   NOM1_DROME Nucleolar MIF4G domain-containing ...5101e-48     189     30     49GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0005488; F:binding; IEA:InterPro.
GO:0016070; P:RNA metabolic process; IEA:InterPro.
6P0CM96    831   CWC22_CRYNJ Pre-mRNA-splicing factor CWC22 OS...5280.0000000009     66.2     20     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
7P0CM97    831   CWC22_CRYNB Pre-mRNA-splicing factor CWC22 OS...5280.0000000009     66.2     20     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
8Q5BGP1    868   CWC22_EMENI Pre-mRNA-splicing factor cwc22 OS...1380.0000002     58.5     28     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
9Q4WKB9    881   CWC22_ASPFU Pre-mRNA-splicing factor cwc22 OS...1380.0000007     57     28     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
10Q9VJ87    1330   CWC22_DROME Pre-mRNA-splicing factor CWC22 ho...1780.00001     53.1     25     43GO:0005681; C:spliceosomal complex; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006911; P:phagocytosis, engulfment; IMP:FlyBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
11Q9P6R9    887   CWC22_SCHPO Pre-mRNA-splicing factor cwf22 OS...1670.00001     52.8     22     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; ISS:PomBase.
GO:0005488; F:binding; IEA:InterPro.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
12Q4PCY0    886   CWC22_USTMA Pre-mRNA-splicing factor CWC22 OS...1290.0001     50.1     24     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
13Q52KN9    803   CWC22_XENLA Pre-mRNA-splicing factor CWC22 ho...4580.002     45.4     19     41GO:0005681; C:spliceosomal complex; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
14Q7RX84    1010   CWC22_NEUCR Pre-mRNA-splicing factor cwc-22 O...2010.005     44.3     25     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
15Q52B63    907   CWC22_MAGO7 Pre-mRNA-splicing factor CWC22 OS...1410.075     40.4     25     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
16Q59XY0    648   CWC22_CANAL Pre-mRNA-splicing factor CWC22 OS...1480.18     39.3     25     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
17Q751P4    554   CWC22_ASHGO Pre-mRNA-splicing factor CWC22 OS...1190.35     38.1     25     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
18Q8BSY0    741   ASPH_MOUSE Aspartyl/asparaginyl beta-hydroxyl...840.72     37.4     36     49GO:0030176; C:integral to endoplasmic reticulum membrane; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0016702; F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; IEA:UniProtKB-KW.::GO:0004597; F:peptide-aspartate beta-dioxygenase activity; IEA:EC.
GO:0060325; P:face morphogenesis; IMP:MGI.::GO:0035108; P:limb morphogenesis; IMP:MGI.::GO:0008285; P:negative regulation of cell proliferation; IGI:MGI.::GO:0060021; P:palate development; IMP:MGI.::GO:0007389; P:pattern specification process; IMP:MGI.::GO:0042264; P:peptidyl-aspartic acid hydroxylation; IDA:MGI.
19Q9HCG8    908   CWC22_HUMAN Pre-mRNA-splicing factor CWC22 ho...5281.4     36.6     19     40GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IDA:HPA.
GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.::GO:0048024; P:regulation of nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
20Q8L7E5    703   WIT1_ARATH WPP domain-interacting tail-anchor...1614.3     34.7     24     44GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0031965; C:nuclear membrane; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.
21Q5RA93    908   CWC22_PONAB Pre-mRNA-splicing factor CWC22 ho...5284.6     34.7     19     39GO:0005681; C:spliceosomal complex; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
22P46363    302   BIRA_HAEIN Bifunctional protein BirA OS=Haemo...686.4     33.9     32     57
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004077; F:biotin-[acetyl-CoA-carboxylase ligase activity; IEA:EC.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006464; P:protein modification process; IEA:InterPro.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.]
23Q6C8C5    954   CWC22_YARLI Pre-mRNA-splicing factor CWC22 OS...2406.4     34.3     21     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
24C3PP60    1092   SYI_RICAE Isoleucine--tRNA ligase OS=Ricketts...797.6     33.9     33     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004822; F:isoleucine-tRNA ligase activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006428; P:isoleucyl-tRNA aminoacylation; IEA:InterPro.
25Q92H19    1092   SYI_RICCN Isoleucine--tRNA ligase OS=Ricketts...797.9     33.9     33     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004822; F:isoleucine-tRNA ligase activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006428; P:isoleucyl-tRNA aminoacylation; IEA:InterPro.
records
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