Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR298C
Length:
231
Number of sequences:
5887
Description:
YLR298C YHC1 SGDID:S000004289, Chr XII from 725416-724721, Genome Release 64-1-1, reverse complement, Verified ORF, "Component of the U1 snRNP complex required for pre-mRNA splicing; putative ortholog of human U1C protein, which is involved in formation of a complex between U1 snRNP and the pre-mRNA 5' splice site"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q05900    231   RU1C_YEAST U1 small nuclear ribonucleoprotein...2313e-172     480     100     100GO:0000243; C:commitment complex; IPI:SGD.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0003729; F:mRNA binding; IPI:SGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
2Q59P44    150   RU1C_CANAL U1 small nuclear ribonucleoprotein...440.00000000000006     70.5     64     82GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
3C4YIU5    150   RU1C_CANAW U1 small nuclear ribonucleoprotein...440.00000000000007     70.1     64     82GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
4D5GDH4    220   RU1C_TUBMM U1 small nuclear ribonucleoprotein...510.00000000009     62.4     49     73GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
5Q4WQM6    216   RU1C_ASPFU U1 small nuclear ribonucleoprotein...510.0000000002     61.6     47     73GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
6Q1K7T5    216   RU1C_NEUCR U1 small nuclear ribonucleoprotein...510.0000000003     60.8     49     73GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
7Q5BBX9    236   RU1C_EMENI U1 small nuclear ribonucleoprotein...510.0000000009     60.1     47     73GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
8C7YRT4    204   RU1C_NECH7 U1 small nuclear ribonucleoprotein...510.000000001     58.9     49     73GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
9D3B3B7    141   RU1C_POLPA U1 small nuclear ribonucleoprotein...390.000000002     57.8     59     72GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
10Q5KC16    220   RU1C_CRYNJ U1 small nuclear ribonucleoprotein...520.00000001     56.6     42     69GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
11A8NYM5    209   RU1C_COPC7 U1 small nuclear ribonucleoprotein...520.00000003     55.5     48     69GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
12Q8JGS0    159   RU1C_DANRE U1 small nuclear ribonucleoprotein...520.00000004     54.3     44     67GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
13A7EYK3    181   RU1C_SCLS1 U1 small nuclear ribonucleoprotein...460.00000005     54.3     52     72GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
14Q4P2Q5    221   RU1C_USTMA U1 small nuclear ribonucleoprotein...480.00000006     55.1     44     71GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
15F7ARS3    138   RU1C_MONDO U1 small nuclear ribonucleoprotein...520.00000008     53.1     44     67GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
16Q9P794    182   RU1C_SCHPO U1 small nuclear ribonucleoprotein...570.00000009     53.9     42     60GO:0000243; C:commitment complex; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.
GO:0003729; F:mRNA binding; ISS:PomBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
17E1C6F0    159   RU1C_CHICK U1 small nuclear ribonucleoprotein...520.00000009     53.1     44     67
18B0JYS7    159   RU1C_XENTR U1 small nuclear ribonucleoprotein...520.0000001     53.1     44     67GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
19Q03369    159   RU1C_XENLA U1 small nuclear ribonucleoprotein...520.0000001     53.1     44     67GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
20F6TFD9    159   RU1C_MACMU U1 small nuclear ribonucleoprotein...520.0000001     53.1     44     67GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
21P09234    159   RU1C_HUMAN U1 small nuclear ribonucleoprotein...520.0000001     53.1     44     67GO:0015030; C:Cajal body; IDA:UniProtKB.::GO:0005685; C:U1 snRNP; IDA:UniProtKB.
GO:0042803; F:protein homodimerization activity; IPI:UniProtKB.::GO:0003727; F:single-stranded RNA binding; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IDA:UniProtKB.
GO:0000387; P:spliceosomal snRNP assembly; IDA:UniProtKB.
22E2RGI3    159   RU1C_CANFA U1 small nuclear ribonucleoprotein...520.0000001     53.1     44     67GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
23Q32PA0    159   RU1C_BOVIN U1 small nuclear ribonucleoprotein...520.0000001     53.1     44     67GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
24Q54YA5    174   RU1C_DICDI U1 small nuclear ribonucleoprotein...400.0000001     53.1     55     68GO:0005685; C:U1 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008380; P:RNA splicing; ISS:dictyBase.
25D3ZCL3    159   RU1C_RAT U1 small nuclear ribonucleoprotein C...520.0000001     53.1     44     67
26Q62241    159   RU1C_MOUSE U1 small nuclear ribonucleoprotein...520.0000001     53.1     44     67
27F6HQ26    213   RU1C_VITVI U1 small nuclear ribonucleoprotein...770.0000002     53.5     34     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
28C0NN85    242   RU1C_AJECG U1 small nuclear ribonucleoprotein...480.0000004     52.8     48     69GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
29E3KIY6    188   RU1C2_PUCGT U1 small nuclear ribonucleoprotei...440.0000004     52     45     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
30E3LAN7    190   RU1C1_PUCGT U1 small nuclear ribonucleoprotei...440.0000005     52     45     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
31Q1RLC9    122   RU1C_CIOIN U1 small nuclear ribonucleoprotein...520.0000005     50.8     42     67GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
records
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