Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR298C
Length:
231
Number of sequences:
5887
Description:
YLR298C YHC1 SGDID:S000004289, Chr XII from 725416-724721, Genome Release 64-1-1, reverse complement, Verified ORF, "Component of the U1 snRNP complex required for pre-mRNA splicing; putative ortholog of human U1C protein, which is involved in formation of a complex between U1 snRNP and the pre-mRNA 5' splice site"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q1RLC9    122   RU1C_CIOIN U1 small nuclear ribonucleoprotein...520.0000005     50.8     42     67GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
32Q7PXU6    152   RU1C_ANOGA U1 small nuclear ribonucleoprotein...390.0000005     51.2     51     69GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
33E3X5D6    151   RU1C_ANODA U1 small nuclear ribonucleoprotein...390.0000005     51.2     51     69GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
34Q298E0    146   RU1C_DROPS U1 small nuclear ribonucleoprotein...390.0000006     50.8     51     69GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
35Q16IW3    154   RU1C_AEDAE U1 small nuclear ribonucleoprotein...390.0000009     50.4     51     69GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
36C5XYW4    228   RU1C2_SORBI U1 small nuclear ribonucleoprotei...390.000001     51.2     54     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
37Q56XE4    207   RU1C_ARATH U1 small nuclear ribonucleoprotein...770.000001     50.8     34     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
38E0VI98    173   RU1C_PEDHC U1 small nuclear ribonucleoprotein...390.000002     50.1     51     69GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
39C5XZK6    231   RU1C1_SORBI U1 small nuclear ribonucleoprotei...390.000002     50.8     54     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
40Q9VE17    145   RU1C_DROME U1 small nuclear ribonucleoprotein...390.000002     49.7     51     69GO:0005685; C:U1 snRNP; ISS:FlyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
41C3Z1P5    221   RU1C_BRAFL U1 small nuclear ribonucleoprotein...520.000003     50.1     40     65GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
42B7Q2M2    150   RU1C_IXOSC U1 small nuclear ribonucleoprotein...500.000006     48.1     44     66GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
43Q4N6K2    141   RU1C_THEPA U1 small nuclear ribonucleoprotein...440.00001     47.4     39     61GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
44Q4UJ14    151   RU1C_THEAN U1 small nuclear ribonucleoprotein...440.00001     47     39     61GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
45A7SEP9    138   RU1C_NEMVE U1 small nuclear ribonucleoprotein...520.00001     46.6     40     65GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
46P90815    142   RU1C_CAEEL U1 small nuclear ribonucleoprotein...300.00002     46.6     57     80GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008340; P:determination of adult lifespan; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.
47A8XW44    142   RU1C_CAEBR U1 small nuclear ribonucleoprotein...300.00002     46.6     57     80GO:0005685; C:U1 snRNP; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
48A5JZQ2    240   RU1C_PLAVS U1 small nuclear ribonucleoprotein...440.00004     47     41     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
49B3LC82    228   RU1C_PLAKH U1 small nuclear ribonucleoprotein...440.00007     46.2     41     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
50Q8IAW3    235   RU1C_PLAF7 U1 small nuclear ribonucleoprotein...440.00009     45.8     41     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
51Q4XRM7    192   RU1C_PLACH U1 small nuclear ribonucleoprotein...440.0002     44.3     41     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
52Q7RNM5    201   RU1C_PLAYO U1 small nuclear ribonucleoprotein...440.0002     44.3     41     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
53Q4YBG7    197   RU1C_PLABA U1 small nuclear ribonucleoprotein...440.0002     44.3     41     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
54D0NHA2    138   RU1C_PHYIT U1 small nuclear ribonucleoprotein...380.0006     42.4     50     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
55Q9CQR5    170   ZMAT5_MOUSE Zinc finger matrin-type protein 5...510.072     36.6     35     55GO:0005689; C:U12-type spliceosomal complex; ISS:HGNC.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
56Q9UDW3    170   ZMAT5_HUMAN Zinc finger matrin-type protein 5...530.077     36.6     34     55GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005689; C:U12-type spliceosomal complex; IDA:HGNC.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IC:HGNC.
57Q2TA39    170   ZMAT5_BOVIN Zinc finger matrin-type protein 5...530.097     36.2     34     55
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
58F4NYQ2    228   RU1C_BATDJ U1 small nuclear ribonucleoprotein...380.23     35.4     42     63GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
59Q0JP11    167   C3H3_ORYSJ Zinc finger CCCH domain-containing...380.26     35     42     55
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
60Q6CWQ4    361   IPL1_KLULA Spindle assembly checkpoint kinase...1681.2     33.5     24     40GO:0000777; C:condensed chromosome kinetochore; IEA:UniProtKB-SubCell.::GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0005819; C:spindle; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.
61Q6AXL8    173   ZMAT5_DANRE Zinc finger matrin-type protein 5...512.3     32.3     39     47GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
records
Previous ‹‹ ›› Next Total records: 62 31 - 60
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::