Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR277C
Length:
779
Number of sequences:
5887
Description:
YLR277C YSH1 SGDID:S000004267, Chr XII from 699495-697156, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative endoribonuclease, subunit of the mRNA cleavage and polyadenylation specificity complex; required for 3' processing, splicing, and transcriptional termination of mRNAs and snoRNAs"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q06224    779   YSH1_YEAST Endoribonuclease YSH1 OS=Saccharom...7790     1613     100     100GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:SGD.
GO:0004521; F:endoribonuclease activity; IMP:SGD.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006379; P:mRNA cleavage; IMP:SGD.::GO:0006378; P:mRNA polyadenylation; IMP:SGD.::GO:0031126; P:snoRNA 3'-end processing; IMP:SGD.::GO:0034247; P:snoRNA splicing; IMP:SGD.::GO:0006369; P:termination of RNA polymerase II transcription; IMP:SGD.
2Q6FUA5    771   YSH1_CANGA Endoribonuclease YSH1 OS=NRRL Y-65...7850     1164     71     86GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
3Q74ZC0    771   YSH1_ASHGO Endoribonuclease YSH1 OS=Y-1056) (...7840     1155     70     86GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
4Q6CUI5    764   YSH1_KLULA Endoribonuclease YSH1 OS=1267 / NR...7740     1120     70     84GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
5Q6BMW3    815   YSH1_DEBHA Endoribonuclease YSH1 OS=0083 / IG...8320     800     51     67GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
6Q6C2Z7    827   YSH1_YARLI Endoribonuclease YSH1 OS=lipolytic...8170     777     49     66GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
7Q59P50    870   YSH1_CANAL Endoribonuclease YSH1 OS=Candida a...8040     778     51     69GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0042493; P:response to drug; IMP:CGD.
8O13794    757   YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosac...7720     724     49     67GO:0005829; C:cytosol; IDA:PomBase.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:PomBase.
GO:0004521; F:endoribonuclease activity; ISS:PomBase.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006379; P:mRNA cleavage; IC:PomBase.::GO:0006378; P:mRNA polyadenylation; IC:PomBase.
9Q4IPN9    864   YSH1_GIBZE Endoribonuclease YSH1 OS=(Wheat he...7760     625     45     62GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
10Q8WZS6    850   YSH1_NEUCR Endoribonuclease ysh-1 OS=1257 / F...7410     618     46     66GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
11Q4PEJ3    880   YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago ...6670     612     48     67GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
12Q4WRC2    872   YSH1_ASPFU Endoribonuclease ysh1 OS=A1100) (A...7090     604     46     63GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
13Q5BEP0    884   YSH1_EMENI Endoribonuclease ysh1 OS=194 / M13...7570     589     43     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
14P79101    684   CPSF3_BOVIN Cleavage and polyadenylation spec...7450     556     41     60GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0008409; F:5'-3' exonuclease activity; ISS:UniProtKB.::GO:0004521; F:endoribonuclease activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0006398; P:histone mRNA 3'-end processing; ISS:UniProtKB.
15Q9QXK7    684   CPSF3_MOUSE Cleavage and polyadenylation spec...7450     555     41     60GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0008409; F:5'-3' exonuclease activity; IDA:UniProtKB.::GO:0004521; F:endoribonuclease activity; IDA:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0006398; P:histone mRNA 3'-end processing; IDA:UniProtKB.
16Q9UKF6    684   CPSF3_HUMAN Cleavage and polyadenylation spec...7450     553     41     60GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0008409; F:5'-3' exonuclease activity; ISS:UniProtKB.::GO:0004521; F:endoribonuclease activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0006398; P:histone mRNA 3'-end processing; IDA:UniProtKB.::GO:0006379; P:mRNA cleavage; TAS:ProtInc.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0006378; P:mRNA polyadenylation; TAS:ProtInc.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
17Q86A79    774   CPSF3_DICDI Cleavage and polyadenylation spec...6720     546     43     62GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.
GO:0006379; P:mRNA cleavage; ISS:UniProtKB.::GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.
18Q9C952    693   CPSF3_ARATH Cleavage and polyadenylation spec...6565e-180     539     43     62GO:0005634; C:nucleus; IDA:TAIR.
GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
19P0CM88    773   YSH1_CRYNJ Endoribonuclease YSH1 OS=ATCC MYA-...7995e-159     488     36     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
20P0CM89    773   YSH1_CRYNB Endoribonuclease YSH1 OS=(Filobasi...7995e-159     488     36     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
21Q5ZIH0    600   INT11_CHICK Integrator complex subunit 11 OS=...4846e-86     290     35     54GO:0032039; C:integrator complex; ISS:HGNC.
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
GO:0016180; P:snRNA processing; ISS:HGNC.
22Q3MHC2    600   INT11_RAT Integrator complex subunit 11 OS=Ra...4422e-85     289     36     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
23Q503E1    598   INT11_DANRE Integrator complex subunit 11 OS=...4862e-85     289     35     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
24Q9CWS4    600   INT11_MOUSE Integrator complex subunit 11 OS=...4422e-85     289     36     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0032039; C:integrator complex; ISS:HGNC.
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
GO:0016180; P:snRNA processing; ISS:HGNC.
25Q5NVE6    600   INT11_PONAB Integrator complex subunit 11 OS=...4381e-83     284     36     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
26Q5TA45    600   INT11_HUMAN Integrator complex subunit 11 OS=...4381e-83     284     36     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
27Q2YDM2    599   INT11_BOVIN Integrator complex subunit 11 OS=...4423e-82     280     36     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
28Q54YL3    744   INT11_DICDI Integrator complex subunit 11 hom...4802e-80     279     33     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
29Q8GUU3    613   CPS3B_ARATH Cleavage and polyadenylation spec...4412e-79     273     33     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
30Q57626    421   Y162_METJA Uncharacterized protein MJ0162 OS=...4503e-52     192     30     51
GO:0016787; F:hydrolase activity; IEA:InterPro.
31Q58633    634   Y1236_METJA Uncharacterized protein MJ1236 OS...4407e-51     192     33     52
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
records
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