Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR277C
Length:
779
Number of sequences:
5887
Description:
YLR277C YSH1 SGDID:S000004267, Chr XII from 699495-697156, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative endoribonuclease, subunit of the mRNA cleavage and polyadenylation specificity complex; required for 3' processing, splicing, and transcriptional termination of mRNAs and snoRNAs"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61Q45493    555   RNJ1_BACSU Ribonuclease J 1 OS=Bacillus subti...810.0002     48.5     30     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IMP:UniProtKB.
62Q2YX35    565   RNJ1_STAAB Ribonuclease J 1 OS=Staphylococcus...920.0008     46.6     26     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
63Q7A171    565   RNJ1_STAAW Ribonuclease J 1 OS=Staphylococcus...920.0008     46.6     26     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
64Q6GAC5    565   RNJ1_STAAS Ribonuclease J 1 OS=Staphylococcus...920.0008     46.6     26     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
65Q6GHZ6    565   RNJ1_STAAR Ribonuclease J 1 OS=Staphylococcus...920.0008     46.6     26     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
66Q7A682    565   RNJ1_STAAN Ribonuclease J 1 OS=Staphylococcus...920.0008     46.6     26     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
67Q99V09    565   RNJ1_STAAM Ribonuclease J 1 OS=Staphylococcus...920.0008     46.6     26     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
68Q5HGZ5    565   RNJ1_STAAC Ribonuclease J 1 OS=Staphylococcus...920.0008     46.6     26     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
69Q2FZG9    565   RNJ1_STAA8 Ribonuclease J 1 OS=Staphylococcus...920.0008     46.6     26     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
70Q2FHZ1    565   RNJ1_STAA3 Ribonuclease J 1 OS=Staphylococcus...920.0008     46.6     26     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
71O33294    558   Y2752_MYCTU Putative ribonuclease J Rv2752c O...800.023     41.6     24     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
72P54123    640   RNJ_SYNY3 Ribonuclease J OS=Synechocystis sp....870.046     40.8     25     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
73Q892B5    312   RNZ_CLOTE Ribonuclease Z OS=Clostridium tetan...670.067     39.7     30     48
GO:0016891; F:endoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0042779; P:tRNA 3'-trailer cleavage; IEA:InterPro.
74Q9V2F5    210   Y119_PYRAB UPF0173 protein PYRAB01190 OS=Pyro...620.077     39.3     29     52
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
75Q47PQ7    318   RNZ_THEFY Ribonuclease Z OS=Thermobifida fusc...990.083     39.7     28     44
GO:0016891; F:endoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0042779; P:tRNA 3'-trailer cleavage; IEA:InterPro.
76O57860    211   Y120_PYRHO UPF0173 protein PH0120 OS=NBRC 100...620.11     38.5     29     52
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
77A9AY83    241   Y4333_HERA2 UPF0173 metal-dependent hydrolase...550.13     38.5     35     58
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
78B1ZZL9    1017   DNLI_OPITP Probable DNA ligase OS=Opitutus te...1030.13     39.7     27     49
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003910; F:DNA ligase (ATP) activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0051103; P:DNA ligation involved in DNA repair; IEA:InterPro.::GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
79Q5JE70    314   RNZ_PYRKO Ribonuclease Z OS=(Thermococcus kod...630.14     38.9     33     51
GO:0016891; F:endoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0042779; P:tRNA 3'-trailer cleavage; IEA:InterPro.
80Q0TQN4    316   RNZ_CLOP1 Ribonuclease Z OS=Clostridium perfr...680.17     38.5     29     47
GO:0016891; F:endoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0042779; P:tRNA 3'-trailer cleavage; IEA:InterPro.
81O31760    555   RNJ2_BACSU Ribonuclease J 2 OS=Bacillus subti...1130.18     38.9     23     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
82Q9KC61    309   RNZ_BACHD Ribonuclease Z OS=9153 / C-125). GN...860.19     38.5     33     48
GO:0016891; F:endoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0042779; P:tRNA 3'-trailer cleavage; IEA:InterPro.
83Q0ST77    316   RNZ_CLOPS Ribonuclease Z OS=Clostridium perfr...680.3     37.7     29     47
GO:0016891; F:endoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0042779; P:tRNA 3'-trailer cleavage; IEA:InterPro.
84A8ABB4    300   RNZ_IGNH4 Ribonuclease Z OS=Ignicoccus hospit...890.37     37.4     22     42
GO:0016891; F:endoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0042779; P:tRNA 3'-trailer cleavage; IEA:InterPro.
85Q58271    448   RNJ_METJA Ribonuclease J OS=JCM 10045 / NBRC ...1010.39     37.7     25     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
86Q02102    140   YLG3_ACIAM Uncharacterized protein in lig 3'r...1200.54     35.4     27     43
87P75497    569   RNJ_MYCPN Ribonuclease J OS=Mycoplasma pneumo...900.56     37.4     29     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
88A5MZX7    303   RNZ_CLOK5 Ribonuclease Z OS=Clostridium kluyv...650.58     37     28     52
GO:0016891; F:endoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0042779; P:tRNA 3'-trailer cleavage; IEA:InterPro.
89B9E3V3    303   RNZ_CLOK1 Ribonuclease Z OS=Clostridium kluyv...650.58     37     28     52
GO:0016891; F:endoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0042779; P:tRNA 3'-trailer cleavage; IEA:InterPro.
90P81414    210   Y020_PYRFU UPF0173 protein PF0020 OS=Pyrococc...650.6     36.2     25     51
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
91P56185    689   RNJ_HELPY Ribonuclease J OS=pylori). GN=HP_14...920.61     37.4     25     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
records
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