Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR277C
Length:
779
Number of sequences:
5887
Description:
YLR277C YSH1 SGDID:S000004267, Chr XII from 699495-697156, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative endoribonuclease, subunit of the mRNA cleavage and polyadenylation specificity complex; required for 3' processing, splicing, and transcriptional termination of mRNAs and snoRNAs"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q58633    634   Y1236_METJA Uncharacterized protein MJ1236 OS...4407e-51     192     33     52
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
32Q5SLP1    431   RNSE_THET8 Ribonuclease TTHA0252 OS=Thermus t...4337e-43     165     27     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
33Q9P2I0    782   CPSF2_HUMAN Cleavage and polyadenylation spec...4057e-37     152     26     48GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:UniProtKB.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006398; P:histone mRNA 3'-end processing; IDA:UniProtKB.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
34Q10568    782   CPSF2_BOVIN Cleavage and polyadenylation spec...4057e-37     152     26     48GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006398; P:histone mRNA 3'-end processing; ISS:UniProtKB.
35O35218    782   CPSF2_MOUSE Cleavage and polyadenylation spec...4104e-36     150     26     48GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006398; P:histone mRNA 3'-end processing; ISS:UniProtKB.
36Q9W799    783   CPSF2_XENLA Cleavage and polyadenylation spec...3852e-35     148     26     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
37Q9V3D6    756   CPSF2_DROME Probable cleavage and polyadenyla...4064e-35     146     27     47GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:FlyBase.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006398; P:histone mRNA 3'-end processing; IMP:FlyBase.::GO:0006379; P:mRNA cleavage; ISS:FlyBase.::GO:0006378; P:mRNA polyadenylation; IMP:FlyBase.
38Q9LKF9    739   CPSF2_ARATH Cleavage and polyadenylation spec...3736e-35     145     28     49GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; NAS:TAIR.::GO:0009506; C:plasmodesma; IDA:TAIR.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0035194; P:posttranscriptional gene silencing by RNA; IMP:TAIR.
39Q652P4    738   CPSF2_ORYSJ Cleavage and polyadenylation spec...4294e-34     143     26     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
40Q60355    428   Y047_METJA Uncharacterized protein MJ0047 OS=...4459e-32     132     26     46
GO:0016787; F:hydrolase activity; IEA:InterPro.
41A8XUS3    842   CPSF2_CAEBR Probable cleavage and polyadenyla...3781e-31     136     25     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
42O17403    843   CPSF2_CAEEL Probable cleavage and polyadenyla...3781e-30     133     26     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000910; P:cytokinesis; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0016246; P:RNA interference; IMP:WormBase.
43Q55BS1    784   CPSF2_DICDI Cleavage and polyadenylation spec...3751e-30     132     26     48GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:dictyBase.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:dictyBase.
GO:0006379; P:mRNA cleavage; ISS:dictyBase.::GO:0006378; P:mRNA polyadenylation; ISS:dictyBase.
44Q08553    188   SYC1_YEAST Protein SYC1 OS=Saccharomyces cere...1991e-29     121     37     56GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:SGD.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0030847; P:termination of RNA polymerase II transcription, exosome-dependent; IPI:SGD.::GO:0030846; P:termination of RNA polymerase II transcription, poly(A)-coupled; IPI:SGD.
45O74740    797   CFT2_SCHPO Cleavage factor two protein 2 OS=S...3296e-23     108     27     44GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:PomBase.
GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0006378; P:mRNA polyadenylation; ISS:PomBase.
46Q54SH0    712   INT9_DICDI Integrator complex subunit 9 homol...4123e-21     102     23     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
47Q4R5Z4    637   INT9_MACFA Integrator complex subunit 9 OS=Ma...4150.000000000000002     84     23     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
48Q55470    554   Y514_SYNY3 Uncharacterized protein sll0514 OS...4400.0000000000002     77.4     22     40
GO:0016787; F:hydrolase activity; IEA:InterPro.
49Q8K114    658   INT9_MOUSE Integrator complex subunit 9 OS=Mu...4330.0000000000003     77     22     39
50Q6DFF4    658   INT9_XENLA Integrator complex subunit 9 OS=Xe...4320.0000000000005     76.3     23     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
51Q2KJA6    658   INT9_BOVIN Integrator complex subunit 9 OS=Bo...4360.0000000000005     76.3     22     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
52Q9NV88    658   INT9_HUMAN Integrator complex subunit 9 OS=Ho...4360.0000000000005     76.3     22     39GO:0032039; C:integrator complex; IDA:HGNC.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0016180; P:snRNA processing; IDA:HGNC.
53Q5ZKK2    658   INT9_CHICK Integrator complex subunit 9 OS=Ga...4330.0000000000007     75.9     23     39
54A7SBF0    660   INT9_NEMVE Integrator complex subunit 9 homol...3450.000000000005     73.2     23     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
55Q12102    859   CFT2_YEAST Cleavage factor two protein 2 OS=S...3200.000000009     62.8     21     45GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:SGD.
GO:0003723; F:RNA binding; IPI:SGD.
GO:0006379; P:mRNA cleavage; IDA:SGD.::GO:0006378; P:mRNA polyadenylation; TAS:SGD.
56Q4L5A3    559   RNJ1_STAHJ Ribonuclease J 1 OS=Staphylococcus...910.00001     52.8     30     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
57Q8CT16    560   RNJ1_STAES Ribonuclease J 1 OS=Staphylococcus...910.00004     50.4     29     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
58Q5HQ80    560   RNJ1_STAEQ Ribonuclease J 1 OS=Staphylococcus...910.00004     50.4     29     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
59Q49WL3    620   RNJ1_STAS1 Ribonuclease J 1 OS=DSM 20229). GN...910.00005     50.4     27     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
60P54122    718   RNJ_CORGL Ribonuclease J OS=LMG 3730 / NCIMB ...830.0001     48.9     27     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
61Q45493    555   RNJ1_BACSU Ribonuclease J 1 OS=Bacillus subti...810.0002     48.5     30     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IMP:UniProtKB.
records
Previous ‹‹ ›› Next Total records: 130 31 - 60
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::