Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR275W
Length:
110
Number of sequences:
5887
Description:
YLR275W SMD2 SGDID:S000004265, Chr XII from 694378-694382,694473-694800, Genome Release 64-1-1, Verified ORF, "Core Sm protein Sm D2; part of heteroheptameric complex (with Smb1p, Smd1p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D2"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q2HJH0    91   LSM5_BOVIN U6 snRNA-associated Sm-like protei...760.11     33.1     22     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
32P24715    81   RUXG_MEDSA Probable small nuclear ribonucleop...590.14     32.7     29     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
33P57670    83   RUXX_THEAC Putative snRNP Sm-like protein OS=...760.18     32.3     29     54GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
34Q05856    199   RSMB_DROME Small nuclear ribonucleoprotein-as...620.27     33.1     32     55GO:0015030; C:Cajal body; IDA:FlyBase.::GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0045495; C:pole plasm; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:FlyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007281; P:germ cell development; IMP:FlyBase.::GO:0008406; P:gonad development; IMP:FlyBase.::GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.
35P17136    214   RSMB_RAT Small nuclear ribonucleoprotein-asso...610.34     32.7     33     54GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
36Q54W83    129   LSM1_DICDI Probable U6 snRNA-associated Sm-li...670.37     32.3     25     54GO:0000932; C:cytoplasmic mRNA processing body; ISS:dictyBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000339; F:RNA cap binding; ISS:dictyBase.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
37Q29329    50   SMD2_PIG Small nuclear ribonucleoprotein Sm D...460.42     30.8     39     67GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
38Q9VLV5    94   RUXE_DROME Probable small nuclear ribonucleop...770.45     31.6     23     56GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; IDA:FlyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.
39Q12330    94   RUXE_YEAST Small nuclear ribonucleoprotein E ...781.3     30.4     24     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
40Q8PGH9    609   GLMS_XANAC Glucosamine--fructose-6-phosphate ...492.3     30.8     33     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004360; F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity; IEA:EC.
GO:0016051; P:carbohydrate biosynthetic process; IEA:InterPro.::GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
41Q6T271    325   VM2BI_BITGA Zinc metalloproteinase/disintegri...742.5     30.4     28     47GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
42Q8LKS5    700   LACS7_ARATH Long chain acyl-CoA synthetase 7,...452.6     30.4     36     53GO:0005777; C:peroxisome; IDA:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004467; F:long-chain fatty acid-CoA ligase activity; IDA:UniProtKB.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006631; P:fatty acid metabolic process; TAS:UniProtKB.::GO:0010193; P:response to ozone; IEP:TAIR.::GO:0009651; P:response to salt stress; IEP:TAIR.
43P50610    718   FLGE_HELPY Flagellar hook protein flgE OS=pyl...813.4     30.4     26     48GO:0030694; C:bacterial-type flagellum basal body, rod; IEA:InterPro.
GO:0003774; F:motor activity; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0001539; P:ciliary or flagellar motility; IEA:InterPro.::GO:0043064; P:flagellum organization; IEA:InterPro.
44Q9ZKY0    718   FLGE_HELPJ Flagellar hook protein flgE OS=Hel...813.4     30.4     26     48GO:0030694; C:bacterial-type flagellum basal body, rod; IEA:InterPro.
GO:0003774; F:motor activity; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0001539; P:ciliary or flagellar motility; IEA:InterPro.::GO:0043064; P:flagellum organization; IEA:InterPro.
45A0Q0M9    77   HFQ_CLONN Protein hfq OS=Clostridium novyi (s...473.7     28.9     32     51
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
46P62305    92   RUXE_MOUSE Small nuclear ribonucleoprotein E ...774.2     28.9     23     55GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
47P62304    92   RUXE_HUMAN Small nuclear ribonucleoprotein E ...774.2     28.9     23     55GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0000245; P:spliceosomal complex assembly; NAS:UniProtKB.::GO:0000387; P:spliceosomal snRNP assembly; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
48P62303    92   RUXE_CHICK Small nuclear ribonucleoprotein E ...774.2     28.9     23     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
49A4FUI2    92   RUXE_BOVIN Small nuclear ribonucleoprotein E ...774.2     28.9     23     55GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
50Q5QZH5    610   GLMS_IDILO Glucosamine--fructose-6-phosphate ...404.3     30     40     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004360; F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity; IEA:EC.
GO:0016051; P:carbohydrate biosynthetic process; IEA:InterPro.::GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
51A1XQR9    92   RUXE_PIG Small nuclear ribonucleoprotein E OS...774.3     28.9     23     55GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
52Q9KG45    600   GLMS_BACHD Glucosamine--fructose-6-phosphate ...684.5     30     32     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004360; F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity; IEA:EC.
GO:0016051; P:carbohydrate biosynthetic process; IEA:InterPro.::GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
53Q6G322    607   GLMS_BARHE Glucosamine--fructose-6-phosphate ...844.6     30     29     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004360; F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity; IEA:EC.
GO:0016051; P:carbohydrate biosynthetic process; IEA:InterPro.::GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
54Q8BJ34    1730   MARF1_MOUSE Meiosis arrest female protein 1 O...574.7     30     33     54GO:0005777; C:peroxisome; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB.
55Q722H1    601   GLMS_LISMF Glucosamine--fructose-6-phosphate ...694.9     29.6     29     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004360; F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity; IEA:EC.
GO:0016051; P:carbohydrate biosynthetic process; IEA:InterPro.::GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
56Q92DS8    601   GLMS_LISIN Glucosamine--fructose-6-phosphate ...695     29.6     29     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004360; F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity; IEA:EC.
GO:0016051; P:carbohydrate biosynthetic process; IEA:InterPro.::GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
57P75489    787   Y288_MYCPN Uncharacterized lipoprotein MPN_28...685.5     29.6     31     47GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
58Q8Y915    601   GLMS_LISMO Glucosamine--fructose-6-phosphate ...696.5     29.3     29     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004360; F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity; IEA:EC.
GO:0016051; P:carbohydrate biosynthetic process; IEA:InterPro.::GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
59Q9CGT6    605   GLMS_LACLA Glucosamine--fructose-6-phosphate ...496.9     29.3     33     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004360; F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity; IEA:EC.
GO:0016051; P:carbohydrate biosynthetic process; IEA:InterPro.::GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
60P91918    160   RSMB_CAEEL Probable small nuclear ribonucleop...607.7     28.9     33     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0002009; P:morphogenesis of an epithelium; IMP:WormBase.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.
61Q5KR05    371   AGUA_SELRU Putative agmatine deiminase OS=Sel...418.2     29.3     37     59
GO:0047632; F:agmatine deiminase activity; IEA:EC.
GO:0009446; P:putrescine biosynthetic process; IEA:InterPro.
records
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