Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR275W
Length:
110
Number of sequences:
5887
Description:
YLR275W SMD2 SGDID:S000004265, Chr XII from 694378-694382,694473-694800, Genome Release 64-1-1, Verified ORF, "Core Sm protein Sm D2; part of heteroheptameric complex (with Smb1p, Smd1p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D2"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q06217    110   SMD2_YEAST Small nuclear ribonucleoprotein Sm...1101e-74     223     100     100GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
2O14036    115   SMD2_SCHPO Small nuclear ribonucleoprotein Sm...1126e-38     129     55     75GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
3P62317    118   SMD2_MOUSE Small nuclear ribonucleoprotein Sm...1134e-30     109     52     74GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
4P62316    118   SMD2_HUMAN Small nuclear ribonucleoprotein Sm...1134e-30     109     52     74GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0030532; C:small nuclear ribonucleoprotein complex; TAS:ProtInc.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0000245; P:spliceosomal complex assembly; TAS:ProtInc.::GO:0000387; P:spliceosomal snRNP assembly; TAS:Reactome.
5Q3SZF8    118   SMD2_BOVIN Small nuclear ribonucleoprotein Sm...1134e-30     109     52     74
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6Q18786    118   SMD2_CAEEL Probable small nuclear ribonucleop...1165e-30     109     50     71GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0006915; P:apoptotic process; IMP:WormBase.::GO:0016477; P:cell migration; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0007281; P:germ cell development; IMP:WormBase.::GO:0008406; P:gonad development; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0032940; P:secretion by cell; IMP:WormBase.
7Q54NC5    112   SMD2_DICDI Probable small nuclear ribonucleop...1055e-29     106     53     74GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
8Q9VI10    119   SMD2_DROME Probable small nuclear ribonucleop...1094e-28     104     55     72GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:UniProtKB.
GO:0007067; P:mitosis; IMP:FlyBase.::GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
9P57743    89   LSM3_YEAST U6 snRNA-associated Sm-like protei...670.0000008     47     34     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
10P62311    102   LSM3_MOUSE U6 snRNA-associated Sm-like protei...810.00001     43.9     32     58
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
11P62310    102   LSM3_HUMAN U6 snRNA-associated Sm-like protei...810.00001     43.9     32     58GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
12Q32PE9    102   LSM3_BOVIN U6 snRNA-associated Sm-like protei...810.00001     43.9     32     58
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
13Q0W8R9    72   RUXX_UNCMA Putative snRNP Sm-like protein OS=...750.00001     43.5     28     56GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
14Q8PZZ9    72   RUXX_METMA Putative snRNP Sm-like protein OS=...750.00002     43.1     35     63GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
15Q8TL47    72   RUXX_METAC Putative snRNP Sm-like protein OS=...750.00003     42.7     32     60GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
16Q9Y7M4    93   LSM3_SCHPO Probable U6 snRNA-associated Sm-li...670.00004     42.4     34     55GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.
17Q1ZXK3    97   LSM3_DICDI Probable U6 snRNA-associated Sm-li...810.00004     42.4     31     59GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
18Q465S1    72   RUXX_METBF Putative snRNP Sm-like protein OS=...750.00005     42     35     63GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
19Q54HH8    257   SMDL_DICDI Small nuclear ribonucleoprotein Sm...940.0001     43.1     26     57GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
20Q12U30    72   RUXX_METBU Putative snRNP Sm-like protein OS=...750.0002     40     33     57GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
21Q9YEQ5    77   RUXX_AERPE Putative snRNP Sm-like protein OS=...790.0002     40     30     57GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
22O29386    77   RUXX_ARCFU Putative snRNP Sm-like protein OS=...790.002     37.4     27     56GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
23O26745    81   RUXX_METTH Putative snRNP Sm-like protein OS=...750.007     35.8     25     55GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
24A8XDT0    90   RUXE_CAEBR Probable small nuclear ribonucleop...770.03     34.7     29     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
25Q9XTU6    90   RUXE_CAEEL Probable small nuclear ribonucleop...770.036     34.3     29     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0043186; C:P granule; IDA:WormBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006915; P:apoptotic process; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0007281; P:germ cell development; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0018996; P:molting cycle, collagen and cuticulin-based cuticle; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0006997; P:nucleus organization; IMP:WormBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0032940; P:secretion by cell; IMP:WormBase.
26Q97BU5    83   RUXX_THEVO Putative snRNP Sm-like protein OS=...760.078     33.1     29     55GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
27Q55A45    274   RSMB_DICDI Small nuclear ribonucleoprotein-as...580.1     34.3     28     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
28Q5R628    91   LSM5_PONAB U6 snRNA-associated Sm-like protei...760.11     33.1     22     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
29P62322    91   LSM5_MOUSE U6 snRNA-associated Sm-like protei...760.11     33.1     22     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
30Q9Y4Y9    91   LSM5_HUMAN U6 snRNA-associated Sm-like protei...760.11     33.1     22     57GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; TAS:ProtInc.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0006397; P:mRNA processing; TAS:ProtInc.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
31Q2HJH0    91   LSM5_BOVIN U6 snRNA-associated Sm-like protei...760.11     33.1     22     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
records
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