Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR247C
Length:
1556
Number of sequences:
5887
Description:
YLR247C IRC20 SGDID:S000004237, Chr XII from 633354-628684, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative helicase; localizes to the mitochondrion and the nucleus; YLR247C is not an essential gene; null mutant displays increased levels of spontaneous Rad52p foci"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
481Q28E95    861   SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF...900.054     42     27     49GO:0005794; C:Golgi apparatus; IEA:UniProtKB-SubCell.::GO:0030027; C:lamellipodium; IEA:UniProtKB-SubCell.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
482O22755    185   ATL44_ARATH RING-H2 finger protein ATL44 OS=A...430.054     40.4     42     53GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
483A6NCK2    446   TR43B_HUMAN Tripartite motif-containing prote...440.055     41.6     43     57GO:0005622; C:intracellular; IEA:InterPro.
GO:0008270; F:zinc ion binding; IEA:InterPro.
484Q9JIX5    2581   CHD8_RAT Chromodomain-helicase-DNA-binding pr...640.056     42     33     50GO:0071339; C:MLL1 complex; ISS:UniProtKB.
GO:0070016; F:armadillo repeat domain binding; IPI:RGD.::GO:0005524; F:ATP binding; ISS:UniProtKB.::GO:0008013; F:beta-catenin binding; IDA:UniProtKB.::GO:0003677; F:DNA binding; ISS:UniProtKB.::GO:0003678; F:DNA helicase activity; ISS:UniProtKB.::GO:0008094; F:DNA-dependent ATPase activity; ISS:UniProtKB.::GO:0035064; F:methylated histone residue binding; ISS:UniProtKB.::GO:0002039; F:p53 binding; ISS:UniProtKB.
GO:0043044; P:ATP-dependent chromatin remodeling; ISS:UniProtKB.::GO:0060070; P:canonical Wnt receptor signaling pathway; IDA:UniProtKB.::GO:0043066; P:negative regulation of apoptotic process; ISS:UniProtKB.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0030178; P:negative regulation of Wnt receptor signaling pathway; IDA:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0045945; P:positive regulation of transcription from RNA polymerase III promoter; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
485Q7KRW1    809   TRC8_DROME Protein TRC8 homolog OS=Drosophila...380.056     42     37     55GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0045926; P:negative regulation of growth; IMP:UniProtKB.::GO:0007418; P:ventral midline development; IMP:UniProtKB.
486Q3MV19    556   TRF6A_XENLA TNF receptor-associated factor 6-...380.056     41.6     50     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007250; P:activation of NF-kappaB-inducing kinase activity; IDA:UniProtKB.::GO:0070534; P:protein K63-linked ubiquitination; ISS:UniProtKB.::GO:0042981; P:regulation of apoptotic process; IEA:InterPro.
487Q9HCK8    2581   CHD8_HUMAN Chromodomain-helicase-DNA-binding ...640.057     42     33     50GO:0071339; C:MLL1 complex; IDA:UniProtKB.
GO:0005524; F:ATP binding; IDA:UniProtKB.::GO:0008013; F:beta-catenin binding; IDA:UniProtKB.::GO:0003677; F:DNA binding; IMP:UniProtKB.::GO:0003678; F:DNA helicase activity; IMP:UniProtKB.::GO:0008094; F:DNA-dependent ATPase activity; IDA:UniProtKB.::GO:0035064; F:methylated histone residue binding; IDA:UniProtKB.::GO:0002039; F:p53 binding; ISS:UniProtKB.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0043044; P:ATP-dependent chromatin remodeling; IMP:UniProtKB.::GO:0060070; P:canonical Wnt receptor signaling pathway; IDA:UniProtKB.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IMP:UniProtKB.::GO:0030178; P:negative regulation of Wnt receptor signaling pathway; IDA:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IMP:UniProtKB.::GO:0045945; P:positive regulation of transcription from RNA polymerase III promoter; IMP:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
488Q7T037    757   RF12B_XENLA E3 ubiquitin-protein ligase RNF12...600.057     41.6     35     52GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0042802; F:identical protein binding; ISS:UniProtKB.::GO:0008134; F:transcription factor binding; ISS:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000578; P:embryonic axis specification; ISS:UniProtKB.::GO:0042787; P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process; ISS:UniProtKB.
489Q9M0R4    357   ATL37_ARATH Putative RING-H2 finger protein A...950.057     41.2     28     44GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
490Q09XV5    2582   CHD8_MOUSE Chromodomain-helicase-DNA-binding ...640.058     42     33     50GO:0071339; C:MLL1 complex; ISS:UniProtKB.
GO:0005524; F:ATP binding; ISS:UniProtKB.::GO:0008013; F:beta-catenin binding; ISS:UniProtKB.::GO:0003677; F:DNA binding; IDA:UniProtKB.::GO:0003678; F:DNA helicase activity; ISS:UniProtKB.::GO:0008094; F:DNA-dependent ATPase activity; ISS:UniProtKB.::GO:0035064; F:methylated histone residue binding; ISS:UniProtKB.::GO:0002039; F:p53 binding; IPI:UniProtKB.
GO:0043044; P:ATP-dependent chromatin remodeling; ISS:UniProtKB.::GO:0060070; P:canonical Wnt receptor signaling pathway; ISS:UniProtKB.::GO:0001701; P:in utero embryonic development; IMP:MGI.::GO:0043066; P:negative regulation of apoptotic process; IDA:UniProtKB.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0030178; P:negative regulation of Wnt receptor signaling pathway; ISS:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0045945; P:positive regulation of transcription from RNA polymerase III promoter; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
491Q9CY62    165   RN181_MOUSE E3 ubiquitin-protein ligase RNF18...440.059     39.7     39     52
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
492Q566M8    419   RN150_DANRE RING finger protein 150 OS=Danio ...800.06     41.2     28     46GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
493B3DK16    234   PCF5A_DANRE Polycomb group RING finger protei...440.061     40.8     41     64GO:0031519; C:PcG protein complex; ISS:UniProtKB.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
494Q6ZSG1    346   RN165_HUMAN RING finger protein 165 OS=Homo s...420.062     41.2     40     57
GO:0008270; F:zinc ion binding; IEA:InterPro.
495Q865W2    486   TRI50_PIG E3 ubiquitin-protein ligase TRIM50 ...440.063     41.6     34     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
496Q96BQ3    446   TRI43_HUMAN Tripartite motif-containing prote...440.063     41.2     43     57GO:0005622; C:intracellular; IEA:InterPro.
GO:0008270; F:zinc ion binding; IEA:InterPro.
497Q61687    2476   ATRX_MOUSE Transcriptional regulator ATRX OS=...2123.1     36.2     24     43GO:0000792; C:heterochromatin; IDA:MGI.::GO:0000228; C:nuclear chromosome; IDA:MGI.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003682; F:chromatin binding; IDA:MGI.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0030900; P:forebrain development; IMP:MGI.
498O17917    384   RN113_CAEEL RING finger protein 113 homolog O...390.064     41.2     44     51
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0007281; P:germ cell development; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0042127; P:regulation of cell proliferation; IMP:WormBase.::GO:0040020; P:regulation of meiosis; IMP:WormBase.
499O15541    343   R113A_HUMAN RING finger protein 113A OS=Homo ...460.065     41.2     37     52
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
500Q8NHY2    731   RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2...380.065     41.6     42     55GO:0005813; C:centrosome; IDA:HPA.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005925; C:focal adhesion; IDA:HPA.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006977; P:DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest; TAS:Reactome.
501P0CQ62    820   BRE1_CRYNJ E3 ubiquitin-protein ligase BRE1 O...430.067     41.6     37     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.
502P0CQ63    820   BRE1_CRYNB E3 ubiquitin-protein ligase BRE1 O...430.067     41.6     37     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.
503Q9C1X4    513   YKW3_SCHPO Uncharacterized RING finger protei...910.068     41.2     25     44
GO:0008270; F:zinc ion binding; IEA:InterPro.
504Q54N40    459   PEX12_DICDI Putative peroxisome assembly prot...370.071     41.2     43     51GO:0005779; C:integral to peroxisomal membrane; ISS:dictyBase.
GO:0008022; F:protein C-terminus binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; ISS:dictyBase.
GO:0016558; P:protein import into peroxisome matrix; ISS:dictyBase.
505Q6IV56    222   RN141_DANRE RING finger protein 141 OS=Danio ...550.073     40.4     31     55
GO:0008270; F:zinc ion binding; IEA:InterPro.
506E9QAU8    347   RN165_MOUSE RING finger protein 165 OS=Mus mu...420.073     40.8     40     57
GO:0008270; F:zinc ion binding; IEA:InterPro.
507Q6FWF3    693   BRE1_CANGA E3 ubiquitin-protein ligase BRE1 O...480.074     41.2     42     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.
508Q5M7Z0    435   RNFT1_HUMAN RING finger and transmembrane dom...390.074     41.2     36     54GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
509Q5SSZ7    913   ZNRF3_MOUSE Zinc/RING finger protein 3 OS=Mus...520.074     41.6     37     50GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
510Q93Z92    390   RING4_ARATH E3 ubiquitin-protein ligase At4g1...420.077     40.8     45     62GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005774; C:vacuolar membrane; IDA:TAIR.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
511P0CH02    362   AT21B_ARATH Putative RING-H2 finger protein A...430.079     40.8     40     51GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
records
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