Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR247C
Length:
1556
Number of sequences:
5887
Description:
YLR247C IRC20 SGDID:S000004237, Chr XII from 633354-628684, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative helicase; localizes to the mitochondrion and the nucleus; YLR247C is not an essential gene; null mutant displays increased levels of spontaneous Rad52p foci"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
361P86449    446   TR43C_MOUSE Tripartite motif-containing prote...570.008     44.3     37     56GO:0005622; C:intracellular; IEA:InterPro.
GO:0008270; F:zinc ion binding; IEA:InterPro.
362Q6NRG0    532   RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-...1590.009     44.3     26     42GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0000151; C:ubiquitin ligase complex; ISS:UniProtKB.
GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0042393; F:histone binding; ISS:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:InterPro.::GO:0006302; P:double-strand break repair; ISS:UniProtKB.::GO:0033522; P:histone H2A ubiquitination; ISS:UniProtKB.::GO:0033523; P:histone H2B ubiquitination; ISS:UniProtKB.::GO:0045739; P:positive regulation of DNA repair; ISS:UniProtKB.::GO:0010212; P:response to ionizing radiation; ISS:UniProtKB.
363Q5PPX5    257   RN170_XENLA RING finger protein 170 OS=Xenopu...470.009     43.5     40     53GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
364Q03605    160   YNN1_CAEEL Uncharacterized RING finger protei...420.009     42     38     60
GO:0008270; F:zinc ion binding; IEA:InterPro.
365Q9R049    643   AMFR_MOUSE E3 ubiquitin-protein ligase AMFR O...460.009     44.3     33     57GO:0030176; C:integral to endoplasmic reticulum membrane; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0004872; F:receptor activity; IEA:UniProtKB-KW.::GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030433; P:ER-associated protein catabolic process; ISS:UniProtKB.::GO:0000209; P:protein polyubiquitination; ISS:UniProtKB.
366Q6IV57    230   RN141_RAT RING finger protein 141 OS=Rattus n...550.009     43.1     35     55
GO:0008270; F:zinc ion binding; IEA:InterPro.
367Q6FPI4    411   RAD18_CANGA Postreplication repair E3 ubiquit...430.009     43.9     37     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
368Q6NZ21    419   RNFT1_DANRE RING finger and transmembrane dom...390.009     43.9     36     54GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
369Q28DS3    257   RN170_XENTR RING finger protein 170 OS=Xenopu...460.009     43.5     37     52GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
370Q9D0C1    305   RN115_MOUSE E3 ubiquitin-protein ligase RNF11...470.01     43.5     34     53GO:0005829; C:cytosol; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0051865; P:protein autoubiquitination; ISS:UniProtKB.
371Q3UWZ0    467   TRI75_MOUSE Tripartite motif-containing prote...450.01     43.9     42     60GO:0005622; C:intracellular; IEA:InterPro.
GO:0008270; F:zinc ion binding; IEA:InterPro.
372O82353    214   ATL67_ARATH RING-H2 finger protein ATL67 OS=A...440.01     42.7     36     59GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
373Q99MB7    230   RN141_MOUSE RING finger protein 141 OS=Mus mu...550.01     43.1     35     55
GO:0003677; F:DNA binding; IDA:MGI.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IDA:MGI.
374Q570X5    261   ATL58_ARATH RING-H2 finger protein ATL58 OS=A...520.01     43.1     38     58GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
375Q32L15    230   RN141_BOVIN RING finger protein 141 OS=Bos ta...550.011     43.1     35     55
GO:0008270; F:zinc ion binding; IEA:InterPro.
376Q2XNS1    231   RN141_CANFA RING finger protein 141 OS=Canis ...550.011     43.1     35     55
GO:0008270; F:zinc ion binding; IEA:InterPro.
377Q8GYT9    358   SIS3_ARATH E3 ubiquitin-protein ligase SIS3 O...470.011     43.5     45     55GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0010182; P:sugar mediated signaling pathway; IMP:TAIR.
378O43164    708   PJA2_HUMAN E3 ubiquitin-protein ligase Praja-...540.011     43.9     33     48GO:0030054; C:cell junction; IEA:UniProtKB-KW.::GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IDA:UniProtKB.::GO:0014069; C:postsynaptic density; IEA:UniProtKB-SubCell.::GO:0045211; C:postsynaptic membrane; IEA:UniProtKB-KW.
GO:0034236; F:protein kinase A catalytic subunit binding; IMP:UniProtKB.::GO:0034237; F:protein kinase A regulatory subunit binding; IMP:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007616; P:long-term memory; ISS:UniProtKB.::GO:0010738; P:regulation of protein kinase A signaling cascade; IMP:UniProtKB.
379Q8JIR0    320   BMI1A_DANRE Polycomb complex protein BMI-1-A ...440.012     43.5     43     57GO:0031519; C:PcG protein complex; ISS:UniProtKB.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
380Q5R4R1    708   PJA2_PONAB E3 ubiquitin-protein ligase Praja-...540.012     43.9     33     48GO:0030054; C:cell junction; IEA:UniProtKB-KW.::GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; ISS:UniProtKB.::GO:0014069; C:postsynaptic density; IEA:UniProtKB-SubCell.::GO:0045211; C:postsynaptic membrane; IEA:UniProtKB-KW.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0034236; F:protein kinase A catalytic subunit binding; ISS:UniProtKB.::GO:0034237; F:protein kinase A regulatory subunit binding; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007616; P:long-term memory; ISS:UniProtKB.::GO:0010738; P:regulation of protein kinase A signaling cascade; ISS:UniProtKB.
381Q5R7K8    230   RN141_PONAB RING finger protein 141 OS=Pongo ...550.012     42.7     35     55
GO:0008270; F:zinc ion binding; IEA:InterPro.
382Q8WVD5    230   RN141_HUMAN RING finger protein 141 OS=Homo s...550.012     42.7     35     55
GO:0008270; F:zinc ion binding; IEA:InterPro.
383A6NK02    468   TRI75_HUMAN Tripartite motif-containing prote...450.012     43.5     44     58GO:0005622; C:intracellular; IEA:InterPro.
GO:0008270; F:zinc ion binding; IEA:InterPro.
384Q8GW10    335   BAH1L_ARATH Probable E3 ubiquitin-protein lig...520.012     43.5     44     56
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
385Q9BV68    326   RN126_HUMAN RING finger protein 126 OS=Homo s...440.012     43.1     34     52
GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
386O49691    289   ATL29_ARATH RING-H2 finger protein ATL29 OS=A...570.012     43.1     33     53GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
387Q80U04    707   PJA2_MOUSE E3 ubiquitin-protein ligase Praja-...540.012     43.9     33     48GO:0030054; C:cell junction; IEA:UniProtKB-KW.::GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; ISS:UniProtKB.::GO:0014069; C:postsynaptic density; IEA:UniProtKB-SubCell.::GO:0045211; C:postsynaptic membrane; IEA:UniProtKB-KW.
GO:0034236; F:protein kinase A catalytic subunit binding; ISS:UniProtKB.::GO:0034237; F:protein kinase A regulatory subunit binding; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007616; P:long-term memory; ISS:UniProtKB.::GO:0010738; P:regulation of protein kinase A signaling cascade; ISS:UniProtKB.
388Q803C1    485   RNF8_DANRE E3 ubiquitin-protein ligase RNF8 O...410.013     43.5     46     59GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0000151; C:ubiquitin ligase complex; ISS:UniProtKB.
GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0042393; F:histone binding; ISS:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0051301; P:cell division; IEA:InterPro.::GO:0006302; P:double-strand break repair; ISS:UniProtKB.::GO:0033522; P:histone H2A ubiquitination; ISS:UniProtKB.::GO:0033523; P:histone H2B ubiquitination; ISS:UniProtKB.::GO:0045739; P:positive regulation of DNA repair; ISS:UniProtKB.::GO:0010212; P:response to ionizing radiation; ISS:UniProtKB.
389Q9Y4L5    304   RN115_HUMAN E3 ubiquitin-protein ligase RNF11...440.013     43.1     34     55GO:0005829; C:cytosol; ISS:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0051865; P:protein autoubiquitination; IDA:UniProtKB.
390P86448    445   TR43B_MOUSE Tripartite motif-containing prote...530.013     43.5     40     58GO:0005622; C:intracellular; IEA:InterPro.
GO:0008270; F:zinc ion binding; IEA:InterPro.
391Q8N7C7    305   RN148_HUMAN RING finger protein 148 OS=Homo s...470.013     43.1     38     57GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
records
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