Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR247C
Length:
1556
Number of sequences:
5887
Description:
YLR247C IRC20 SGDID:S000004237, Chr XII from 633354-628684, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative helicase; localizes to the mitochondrion and the nucleus; YLR247C is not an essential gene; null mutant displays increased levels of spontaneous Rad52p foci"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
301Q8GT75    236   NIP1_ARATH NEP1-interacting protein 1 OS=Arab...440.003     44.7     39     57GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
302Q95153    1878   BRCA1_CANFA Breast cancer type 1 susceptibili...550.003     46.2     42     58GO:0031436; C:BRCA1-BARD1 complex; ISS:UniProtKB.
GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006633; P:fatty acid biosynthetic process; IEA:UniProtKB-KW.::GO:0045717; P:negative regulation of fatty acid biosynthetic process; ISS:UniProtKB.::GO:0051865; P:protein autoubiquitination; ISS:UniProtKB.::GO:0085020; P:protein K6-linked ubiquitination; ISS:UniProtKB.
303Q6CSS6    229   CWC24_KLULA Pre-mRNA-splicing factor CWC24 OS...380.003     44.7     39     55GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
304Q6J6I8    1863   BRCA1_GORGO Breast cancer type 1 susceptibili...460.003     46.2     43     59GO:0031436; C:BRCA1-BARD1 complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; ISS:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006633; P:fatty acid biosynthetic process; IEA:UniProtKB-KW.::GO:0045717; P:negative regulation of fatty acid biosynthetic process; ISS:UniProtKB.::GO:0051865; P:protein autoubiquitination; ISS:UniProtKB.::GO:0085020; P:protein K6-linked ubiquitination; ISS:UniProtKB.
305P10862    487   RAD18_YEAST Postreplication repair E3 ubiquit...410.003     45.4     39     54GO:0000790; C:nuclear chromatin; IDA:SGD.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003697; F:single-stranded DNA binding; IDA:SGD.::GO:0004842; F:ubiquitin-protein ligase activity; IPI:SGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0042275; P:error-free postreplication DNA repair; IGI:SGD.::GO:0070987; P:error-free translesion synthesis; IGI:SGD.::GO:0042276; P:error-prone translesion synthesis; IGI:SGD.::GO:0006513; P:protein monoubiquitination; IMP:SGD.
306Q9VE61    147   RN181_DROME E3 ubiquitin-protein ligase RNF18...920.003     43.1     28     45
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
307Q9Y7K6    741   YGI4_SCHPO Uncharacterized RING finger protei...560.003     45.8     32     57GO:0005634; C:nucleus; IDA:PomBase.
GO:0004842; F:ubiquitin-protein ligase activity; ISS:PomBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006325; P:chromatin organization; ISS:PomBase.::GO:0006342; P:chromatin silencing; ISS:PomBase.::GO:0006511; P:ubiquitin-dependent protein catabolic process; ISS:PomBase.
308Q91YL2    313   RN126_MOUSE RING finger protein 126 OS=Mus mu...440.003     45.1     36     55
GO:0008270; F:zinc ion binding; IEA:InterPro.
309Q2U9B0    760   BRE1_ASPOR E3 ubiquitin-protein ligase bre1 O...1620.004     45.8     26     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.
310P68907    1062   PZRN3_RAT E3 ubiquitin-protein ligase PDZRN3 ...500.004     45.8     36     50
GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
311P25916    324   BMI1_MOUSE Polycomb complex protein BMI-1 OS=...440.004     45.1     43     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016604; C:nuclear body; IDA:MGI.::GO:0000151; C:ubiquitin ligase complex; ISS:UniProtKB.
GO:0003682; F:chromatin binding; IDA:MGI.::GO:0043565; F:sequence-specific DNA binding; IDA:MGI.::GO:0008270; F:zinc ion binding; ISS:UniProtKB.
GO:0007420; P:brain development; IMP:MGI.::GO:0048704; P:embryonic skeletal system morphogenesis; IGI:MGI.::GO:0016573; P:histone acetylation; IGI:MGI.::GO:0016574; P:histone ubiquitination; IDA:MGI.::GO:0006959; P:humoral immune response; IMP:MGI.::GO:0001701; P:in utero embryonic development; IGI:MGI.::GO:0043066; P:negative regulation of apoptotic process; IGI:MGI.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:MGI.::GO:0030890; P:positive regulation of B cell proliferation; IMP:HGNC.::GO:0033092; P:positive regulation of immature T cell proliferation in thymus; IMP:HGNC.::GO:0051443; P:positive regulation of ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0021903; P:rostrocaudal neural tube patterning; IMP:MGI.::GO:0048103; P:somatic stem cell division; IMP:MGI.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
312Q5R8L2    326   BMI1_PONAB Polycomb complex protein BMI-1 OS=...440.004     45.1     43     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000151; C:ubiquitin ligase complex; ISS:UniProtKB.
GO:0008270; F:zinc ion binding; ISS:UniProtKB.
GO:0051443; P:positive regulation of ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
313P35226    326   BMI1_HUMAN Polycomb complex protein BMI-1 OS=...440.004     45.1     43     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:HPA.::GO:0035102; C:PRC1 complex; IDA:UniProtKB.::GO:0000151; C:ubiquitin ligase complex; IDA:UniProtKB.
GO:0071535; F:RING-like zinc finger domain binding; IPI:UniProtKB.::GO:0008270; F:zinc ion binding; IDA:UniProtKB.
GO:0030097; P:hemopoiesis; IEP:UniProtKB.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IMP:UniProtKB.::GO:0048146; P:positive regulation of fibroblast proliferation; IMP:BHF-UCL.::GO:0051443; P:positive regulation of ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0007379; P:segment specification; TAS:ProtInc.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
314P87176    269   SLX8_SCHPO E3 ubiquitin-protein ligase comple...420.004     44.7     45     55GO:0033768; C:SUMO-targeted ubiquitin ligase complex; IPI:PomBase.
GO:0005515; F:protein binding; IPI:PomBase.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:PomBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000077; P:DNA damage checkpoint; IMP:PomBase.::GO:0006310; P:DNA recombination; IGI:PomBase.::GO:0033234; P:negative regulation of protein sumoylation; IMP:PomBase.
315Q7ZYZ7    261   PCGF1_DANRE Polycomb group RING finger protei...580.004     44.7     36     59GO:0031519; C:PcG protein complex; ISS:UniProtKB.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
316Q32KX7    326   BMI1_BOVIN Polycomb complex protein BMI-1 OS=...440.004     45.1     43     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000151; C:ubiquitin ligase complex; ISS:UniProtKB.
GO:0008270; F:zinc ion binding; ISS:UniProtKB.
GO:0051443; P:positive regulation of ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
317Q9TST0    326   BMI1_FELCA Polycomb complex protein BMI-1 OS=...440.004     45.1     43     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0031519; C:PcG protein complex; ISS:UniProtKB.::GO:0000151; C:ubiquitin ligase complex; ISS:UniProtKB.
GO:0008270; F:zinc ion binding; ISS:UniProtKB.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0051443; P:positive regulation of ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
318Q9FIR0    289   ATL30_ARATH RING-H2 finger protein ATL30 OS=A...1080.004     44.7     30     44GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
319A4HVU6    1098   JBP2_LEIIN Bifunctional helicase and thymine ...2280.004     45.8     21     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0016702; F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; IEA:UniProtKB-KW.::GO:0050341; F:thymine dioxygenase activity; IEA:EC.
320P29836    676   ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 O...440.004     45.4     41     55
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030683; P:evasion by virus of host immune response; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
321P29128    676   ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 O...440.004     45.4     41     55
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030683; P:evasion by virus of host immune response; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
322Q9LX93    301   ATL55_ARATH E3 ubiquitin-protein ligase RING1...440.004     44.7     43     59GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IDA:TAIR.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006952; P:defense response; IEA:UniProtKB-KW.::GO:0043068; P:positive regulation of programmed cell death; IMP:TAIR.::GO:0051865; P:protein autoubiquitination; IDA:UniProtKB.::GO:0009617; P:response to bacterium; IEP:UniProtKB.::GO:0010200; P:response to chitin; IEP:TAIR.::GO:0002238; P:response to molecule of fungal origin; IEP:UniProtKB.
323Q9FGJ6    166   ATL79_ARATH RING-H2 finger protein ATL79 OS=A...430.004     43.1     47     51GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
324Q8BFW4    522   TRI65_MOUSE Tripartite motif-containing prote...480.004     45.4     38     54
GO:0008270; F:zinc ion binding; IEA:InterPro.
325Q7ZWF4    685   RN145_DANRE RING finger protein 145 OS=Danio ...400.005     45.1     38     55GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
326Q5SDR3    326   BMI1_CHICK Polycomb complex protein BMI-1 OS=...440.005     44.7     43     59GO:0031519; C:PcG protein complex; ISS:UniProtKB.::GO:0000151; C:ubiquitin ligase complex; ISS:UniProtKB.
GO:0008270; F:zinc ion binding; ISS:UniProtKB.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0051443; P:positive regulation of ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
327Q9D9R0    233   RN125_MOUSE E3 ubiquitin-protein ligase RNF12...600.005     43.9     33     53GO:0005829; C:cytosol; TAS:Reactome.
GO:0004842; F:ubiquitin-protein ligase activity; EXP:Reactome.::GO:0008270; F:zinc ion binding; IEA:InterPro.
328O80927    235   ATL33_ARATH RING-H2 finger protein ATL33 OS=A...610.005     43.9     36     51GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
329Q84TF5    174   RHA4A_ARATH RING-H2 zinc finger protein RHA4a...490.005     43.1     41     55
GO:0008270; F:zinc ion binding; IEA:InterPro.
330Q6DLV9    243   PCGF1_RAT Polycomb group RING finger protein ...580.005     43.9     36     59GO:0031519; C:PcG protein complex; ISS:UniProtKB.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
331Q9SK92    381   ATL15_ARATH E3 ubiquitin-protein ligase ATL15...480.005     44.7     38     54GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0033591; P:response to L-ascorbic acid; IEP:TAIR.::GO:0009416; P:response to light stimulus; IEP:TAIR.
records
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