Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR247C
Length:
1556
Number of sequences:
5887
Description:
YLR247C IRC20 SGDID:S000004237, Chr XII from 633354-628684, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative helicase; localizes to the mitochondrion and the nucleus; YLR247C is not an essential gene; null mutant displays increased levels of spontaneous Rad52p foci"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
241Q9BSM1    259   PCGF1_HUMAN Polycomb group RING finger protei...1420.001     46.6     25     44GO:0031519; C:PcG protein complex; IDA:UniProtKB.
GO:0008022; F:protein C-terminus binding; IPI:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0035518; P:histone H2A monoubiquitination; IDA:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
242Q8K2Y0    722   RN219_MOUSE RING finger protein 219 OS=Mus mu...480.001     47.4     40     58
GO:0008270; F:zinc ion binding; IEA:InterPro.
243P0CH30    338   RING1_GOSHI E3 ubiquitin-protein ligase RING1...950.001     47     32     53
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
244Q4WUA0    339   CWC24_ASPFU Pre-mRNA-splicing factor cwc24 OS...860.001     47     28     44GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
245Q8LFY8    413   ATL54_ARATH RING-H2 finger protein ATL54 OS=A...610.001     47     34     52GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
246Q9CQ29    239   RN151_MOUSE RING finger protein 151 OS=Mus mu...390.001     46.2     41     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:MGI.
GO:0004842; F:ubiquitin-protein ligase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; IEA:UniProtKB-KW.
247Q6AY01    381   RN133_RAT E3 ubiquitin-protein ligase RNF133 ...480.001     47     46     56GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
248Q14B02    382   RN133_MOUSE E3 ubiquitin-protein ligase RNF13...480.001     47     46     56GO:0005789; C:endoplasmic reticulum membrane; IDA:UniProtKB.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0051865; P:protein autoubiquitination; IDA:UniProtKB.
249Q75EN0    443   RAD18_ASHGO Postreplication repair E3 ubiquit...430.001     47     37     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
250Q5RD97    726   RN219_PONAB RING finger protein 219 OS=Pongo ...410.001     47.4     44     61
GO:0008270; F:zinc ion binding; IEA:InterPro.
251Q8LF65    235   ATL17_ARATH RING-H2 finger protein ATL17 OS=A...940.001     46.2     31     49GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006952; P:defense response; IEA:UniProtKB-KW.::GO:0010200; P:response to chitin; IEP:TAIR.
252Q5W0B1    726   RN219_HUMAN RING finger protein 219 OS=Homo s...410.001     47.4     44     61
GO:0008270; F:zinc ion binding; IEA:InterPro.
253Q940Q4    472   ATL13_ARATH RING-H2 finger protein ATL13 OS=A...480.001     47     42     56GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0080167; P:response to karrikin; IEP:TAIR.
254Q5M974    156   RN181_XENTR E3 ubiquitin-protein ligase RNF18...440.001     44.7     43     57
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
255Q9LUL6    204   ATL61_ARATH Putative RING-H2 finger protein A...460.001     45.4     39     61GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
256P43254    675   COP1_ARATH E3 ubiquitin-protein ligase COP1 O...530.001     47.4     40     57GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:TAIR.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000152; C:nuclear ubiquitin ligase complex; TAS:TAIR.
GO:0042802; F:identical protein binding; IPI:IntAct.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0046283; P:anthocyanin metabolic process; IMP:TAIR.::GO:0006281; P:DNA repair; IMP:TAIR.::GO:0009649; P:entrainment of circadian clock; IMP:TAIR.::GO:0009640; P:photomorphogenesis; IGI:TAIR.::GO:0048573; P:photoperiodism, flowering; IMP:TAIR.::GO:0009585; P:red, far-red light phototransduction; IEA:UniProtKB-KW.::GO:0010119; P:regulation of stomatal movement; IMP:TAIR.::GO:0009641; P:shade avoidance; IMP:TAIR.::GO:0009647; P:skotomorphogenesis; TAS:TAIR.
257O55176    578   PJA1_MOUSE E3 ubiquitin-protein ligase Praja-...470.001     47     36     51GO:0005737; C:cytoplasm; IDA:MGI.
GO:0005515; F:protein binding; IPI:MGI.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:MGI.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030163; P:protein catabolic process; IDA:MGI.
258Q24368    1027   ISWI_DROME Chromatin-remodeling complex ATPas...2080.083     41.2     22     40GO:0016590; C:ACF complex; IDA:FlyBase.::GO:0008623; C:chromatin accessibility complex; IDA:FlyBase.::GO:0016589; C:NURF complex; IDA:FlyBase.::GO:0005700; C:polytene chromosome; IDA:FlyBase.::GO:0031213; C:RSF complex; IPI:FlyBase.::GO:0005667; C:transcription factor complex; IPI:FlyBase.
GO:0005524; F:ATP binding; ISS:FlyBase.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003678; F:DNA helicase activity; TAS:FlyBase.::GO:0008094; F:DNA-dependent ATPase activity; IDA:FlyBase.::GO:0031491; F:nucleosome binding; IEA:InterPro.::GO:0070615; F:nucleosome-dependent ATPase activity; IDA:FlyBase.::GO:0008134; F:transcription factor binding; IPI:FlyBase.
GO:0043044; P:ATP-dependent chromatin remodeling; IEA:InterPro.::GO:0048813; P:dendrite morphogenesis; IMP:FlyBase.::GO:0035076; P:ecdysone receptor-mediated signaling pathway; IGI:FlyBase.::GO:0007517; P:muscle organ development; IMP:FlyBase.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IMP:FlyBase.::GO:0035063; P:nuclear speck organization; IMP:FlyBase.::GO:0006334; P:nucleosome assembly; IDA:FlyBase.::GO:0042766; P:nucleosome mobilization; IDA:FlyBase.::GO:0016584; P:nucleosome positioning; IDA:FlyBase.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IMP:FlyBase.::GO:0042752; P:regulation of circadian rhythm; IMP:FlyBase.::GO:0006351; P:transcription, DNA-dependent; IDA:FlyBase.
259Q22516    1787   CHD3_CAEEL Chromodomain-helicase-DNA-binding ...630.001     47.4     32     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003682; F:chromatin binding; TAS:WormBase.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0001709; P:cell fate determination; IMP:WormBase.::GO:0006338; P:chromatin remodeling; TAS:WormBase.::GO:0046580; P:negative regulation of Ras protein signal transduction; IMP:WormBase.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.
260Q7SZN2    266   RN170_DANRE RING finger protein 170 OS=Danio ...520.001     46.2     40     56GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0009790; P:embryo development; IMP:ZFIN.
261Q9SN28    236   ATL7_ARATH RING-H2 finger protein ATL7 OS=Ara...1040.001     45.8     28     48GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
262Q5EAE9    407   ATL43_ARATH RING-H2 finger protein ATL43 OS=A...450.001     46.6     42     58GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0008270; F:zinc ion binding; IEA:InterPro.
263Q95K04    376   RN133_MACFA E3 ubiquitin-protein ligase RNF13...850.001     46.6     33     49GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
264Q80V91    347   DTX3_MOUSE Probable E3 ubiquitin-protein liga...480.002     46.2     40     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007219; P:Notch signaling pathway; IDA:MGI.
265Q6BWW6    691   BRE1_DEBHA E3 ubiquitin-protein ligase BRE1 O...480.002     46.6     42     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.
266A6H619    1682   PHRF1_MOUSE PHD and RING finger domain-contai...470.002     47     38     53
GO:0070063; F:RNA polymerase binding; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0035556; P:intracellular signal transduction; IEA:InterPro.
267P93471    672   COP1_PEA E3 ubiquitin-protein ligase COP1 OS=...510.002     46.6     39     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0009585; P:red, far-red light phototransduction; IEA:UniProtKB-KW.
268Q9C040    744   TRIM2_HUMAN Tripartite motif-containing prote...480.002     46.6     40     58GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; NAS:UniProtKB.
GO:0043526; P:neuroprotection; ISS:UniProtKB.
269A4IF63    744   TRIM2_BOVIN Tripartite motif-containing prote...480.002     46.6     40     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043526; P:neuroprotection; ISS:UniProtKB.
270D2GXS7    744   TRIM2_AILME Tripartite motif-containing prote...480.002     46.6     40     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043526; P:neuroprotection; ISS:UniProtKB.
271F7H9X2    744   TRIM2_CALJA Tripartite motif-containing prote...480.002     46.6     40     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043526; P:neuroprotection; ISS:UniProtKB.
records
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