Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR208W
Length:
297
Number of sequences:
5887
Description:
YLR208W SEC13 SGDID:S000004198, Chr XII from 559551-560444, Genome Release 64-1-1, Verified ORF, "Component of the Nup84 nuclear pore sub-complex, the Sec13p-Sec31p complex of the COPII vesicle coat, and the SEA (Seh1-associated) complex; required for vesicle formation in ER to Golgi transport and nuclear pore complex organization; the Nup84 subcomplex has a role in transcription elongation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
991P40968    455   PRP17_YEAST Pre-mRNA-processing factor 17 OS=...2646.6     32     21     39GO:0005681; C:spliceosomal complex; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0000082; P:G1/S transition of mitotic cell cycle; IMP:SGD.::GO:0000350; P:generation of catalytic spliceosome for second transesterification step; IMP:SGD.::GO:0000389; P:nuclear mRNA 3'-splice site recognition; IGI:SGD.::GO:0000348; P:nuclear mRNA branch site recognition; IGI:SGD.
992A6S0T8    478   YTM1_BOTFB Ribosome biogenesis protein ytm1 O...736.8     32     25     48GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
993Q63RA8    433   TOLB_BURPS Protein TolB OS=Burkholderia pseud...917     32     22     38GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell.
GO:0017038; P:protein import; IEA:InterPro.
994Q3JP75    433   TOLB_BURP1 Protein TolB OS=Burkholderia pseud...917     32     22     38GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell.
GO:0017038; P:protein import; IEA:InterPro.
995P93397    377   GBB1_TOBAC Guanine nucleotide-binding protein...1757     32     23     38
GO:0005515; F:protein binding; IPI:IntAct.::GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
996Q6C7Q4    452   HAT2_YARLI Histone acetyltransferase type B s...1997     32     23     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
997P54703    654   DYIN_DICDI Cytoplasmic dynein 1 intermediate ...1847.1     32     26     39GO:0005813; C:centrosome; TAS:dictyBase.::GO:0030286; C:dynein complex; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.
GO:0003774; F:motor activity; IEA:UniProtKB-KW.
998C4YN69    1088   RTC1_CANAW Restriction of telomere capping pr...717.4     32     27     45GO:0005773; C:vacuole; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
999Q5ACL4    1088   RTC1_CANAL Restriction of telomere capping pr...717.4     32     27     45GO:0005773; C:vacuole; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
1000O75717    1129   WDHD1_HUMAN WD repeat and HMG-box DNA-binding...1747.5     32     23     42GO:0005737; C:cytoplasm; TAS:ProtInc.::GO:0005654; C:nucleoplasm; TAS:ProtInc.
GO:0003677; F:DNA binding; TAS:ProtInc.
records
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