Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR208W
Length:
297
Number of sequences:
5887
Description:
YLR208W SEC13 SGDID:S000004198, Chr XII from 559551-560444, Genome Release 64-1-1, Verified ORF, "Component of the Nup84 nuclear pore sub-complex, the Sec13p-Sec31p complex of the COPII vesicle coat, and the SEA (Seh1-associated) complex; required for vesicle formation in ER to Golgi transport and nuclear pore complex organization; the Nup84 subcomplex has a role in transcription elongation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
931Q1JP79    370   ARC1A_BOVIN Actin-related protein 2/3 complex...832.5     33.1     29     46GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.
GO:0030833; P:regulation of actin filament polymerization; IEA:InterPro.
932Q6PA72    326   LST8_XENLA Target of rapamycin complex subuni...1212.6     33.1     24     40GO:0005737; C:cytoplasm; ISS:UniProtKB.
933Q5I0B4    326   LST8_XENTR Target of rapamycin complex subuni...1212.9     33.1     24     40GO:0005737; C:cytoplasm; ISS:UniProtKB.
934Q9FNZ2    430   C3H48_ARATH Zinc finger CCCH domain-containin...1913     33.1     23     37
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
935O94620    340   CWF17_SCHPO Pre-mRNA-splicing factor cwf17 OS...1343     33.1     24     42GO:0005681; C:spliceosomal complex; IDA:PomBase.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IC:PomBase.
936P59328    1117   WDHD1_MOUSE WD repeat and HMG-box DNA-binding...1743.1     33.1     22     39GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
937Q8NHY2    731   RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2...1633.1     33.1     25     44GO:0005813; C:centrosome; IDA:HPA.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005925; C:focal adhesion; IDA:HPA.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006977; P:DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest; TAS:Reactome.
938Q5ZMV9    705   WDR24_CHICK WD repeat-containing protein 24 O...2563.1     33.1     21     37
939Q9AV81    527   PUB72_ORYSJ U-box domain-containing protein 7...1463.2     33.1     24     40GO:0000151; C:ubiquitin ligase complex; IEA:InterPro.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.
940P87177    922   YB1C_SCHPO Uncharacterized WD repeat-containi...1925.1     32.7     21     37GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.::GO:0032040; C:small-subunit processome; ISS:PomBase.
GO:0030515; F:snoRNA binding; ISS:PomBase.
GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.
941O13982    399   YEC8_SCHPO Uncharacterized WD repeat-containi...853.3     32.7     28     45GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.::GO:0043234; C:protein complex; NAS:PomBase.
GO:0000027; P:ribosomal large subunit assembly; ISS:PomBase.
942Q9LRZ0    1131   TPR2_ARATH Topless-related protein 2 OS=Arabi...2627.5     32     23     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:TAIR.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
943Q2GVT8    1258   SEC31_CHAGB Protein transport protein SEC31 O...2623.4     33.1     20     42GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
944Q96WV5    1207   COPA_SCHPO Putative coatomer subunit alpha OS...623.5     33.1     34     48GO:0030126; C:COPI vesicle coat; ISS:PomBase.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006888; P:ER to Golgi vesicle-mediated transport; ISS:PomBase.::GO:0006886; P:intracellular protein transport; IC:PomBase.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; ISS:PomBase.
945Q9SRD0    373   FB88_ARATH Putative F-box protein At1g76830 O...1143.5     32.7     23     39
946P39108    375   PEX7_YEAST Peroxisomal targeting signal 2 rec...1193.6     32.7     25     40GO:0005829; C:cytosol; IDA:SGD.::GO:0005777; C:peroxisome; IDA:SGD.
GO:0005053; F:peroxisome matrix targeting signal-2 binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0016560; P:protein import into peroxisome matrix, docking; IPI:SGD.
947Q6BXX5    1386   RTC1_DEBHA Restriction of telomere capping pr...553.6     33.1     29     49GO:0005773; C:vacuole; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
948P38011    319   GBLP_YEAST Guanine nucleotide-binding protein...543.7     32.7     41     57GO:0022627; C:cytosolic small ribosomal subunit; IDA:SGD.
GO:0001965; F:G-protein alpha-subunit binding; IPI:SGD.::GO:0005092; F:GDP-dissociation inhibitor activity; IDA:SGD.::GO:0004871; F:signal transducer activity; IMP:SGD.
GO:0007186; P:G-protein coupled receptor signaling pathway; IMP:SGD.::GO:0010255; P:glucose mediated signaling pathway; IMP:SGD.::GO:0001403; P:invasive growth in response to glucose limitation; IMP:SGD.::GO:0017148; P:negative regulation of translation; IMP:SGD.
949Q28I90    604   DCAF8_XENTR DDB1- and CUL4-associated factor ...873.7     32.7     30     51
950Q0CY32    673   SCONB_ASPTN Probable E3 ubiquitin ligase comp...1726     32.3     26     38
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
951Q17BB0    427   WDR12_AEDAE Ribosome biogenesis protein WDR12...2804     32.7     23     41GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0070545; C:PeBoW complex; ISS:UniProtKB.
GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:UniProtKB.
952B0WC36    861   BOP1_CULQU Ribosome biogenesis protein BOP1 h...774     32.7     34     49GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0051726; P:regulation of cell cycle; IEA:InterPro.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
953A7TR10    1313   RTC1_VANPO Restriction of telomere capping pr...1504     32.7     23     43GO:0005773; C:vacuole; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
954P90587    601   WD66_PHYPO 66 kDa stress protein OS=Physarum ...1077.1     32     27     43
955P87314    932   HIR1_SCHPO Protein hir1 OS=Schizosaccharomyce...3114.1     32.7     22     37GO:0005829; C:cytosol; IDA:PomBase.::GO:0000417; C:HIR complex; IDA:PomBase.::GO:0000790; C:nuclear chromatin; IC:PomBase.
GO:0003682; F:chromatin binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003714; F:transcription corepressor activity; TAS:PomBase.
GO:0006995; P:cellular response to nitrogen starvation; IMP:PomBase.::GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0030702; P:chromatin silencing at centromere; IMP:PomBase.::GO:0030466; P:chromatin silencing at silent mating-type cassette; IMP:PomBase.::GO:0006336; P:DNA replication-independent nucleosome assembly; TAS:PomBase.::GO:0000070; P:mitotic sister chromatid segregation; IMP:PomBase.::GO:0007070; P:negative regulation of transcription from RNA polymerase II promoter during mitosis; IMP:PomBase.::GO:0007346; P:regulation of mitotic cell cycle; IMP:PomBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
956Q5A7Q3    389   PRP46_CANAL Pre-mRNA-splicing factor PRP46 OS...624.1     32.7     31     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
957Q6PAC3    445   DCA13_MOUSE DDB1- and CUL4-associated factor ...2984.2     32.7     21     38GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:UniProtKB.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
958A1DHW6    689   SCONB_NEOFI Probable E3 ubiquitin ligase comp...1746.6     32     27     39
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
959Q7ZX22    780   WDR24_XENLA WD repeat-containing protein 24 O...2364.4     32.7     22     37
960B0WYR6    1033   WDY_CULQU WD repeat-containing protein on Y c...1184.4     32.7     28     39
961Q6DIF4    607   WDR1_XENTR WD repeat-containing protein 1 OS=...1164.6     32.7     25     41GO:0005884; C:actin filament; ISS:UniProtKB.::GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0005886; C:plasma membrane; ISS:UniProtKB.
GO:0003779; F:actin binding; ISS:UniProtKB.
GO:0030043; P:actin filament fragmentation; ISS:UniProtKB.
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