Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR208W
Length:
297
Number of sequences:
5887
Description:
YLR208W SEC13 SGDID:S000004198, Chr XII from 559551-560444, Genome Release 64-1-1, Verified ORF, "Component of the Nup84 nuclear pore sub-complex, the Sec13p-Sec31p complex of the COPII vesicle coat, and the SEA (Seh1-associated) complex; required for vesicle formation in ER to Golgi transport and nuclear pore complex organization; the Nup84 subcomplex has a role in transcription elongation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
871P46680    615   AIP1_YEAST Actin-interacting protein 1 OS=Sac...1314.1     32.7     25     44GO:0030479; C:actin cortical patch; TAS:SGD.::GO:0043332; C:mating projection tip; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.
GO:0003779; F:actin binding; IPI:UniProtKB.
GO:0030042; P:actin filament depolymerization; IPI:SGD.::GO:0006970; P:response to osmotic stress; TAS:SGD.
872Q62871    638   DC1I2_RAT Cytoplasmic dynein 1 intermediate c...2371     34.7     24     40GO:0030286; C:dynein complex; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0031982; C:vesicle; ISS:UniProtKB.
GO:0003774; F:motor activity; IEA:UniProtKB-KW.
GO:0007018; P:microtubule-based movement; TAS:RGD.::GO:0006810; P:transport; IEA:UniProtKB-KW.
873Q9R0Q6    370   ARC1A_MOUSE Actin-related protein 2/3 complex...1091.1     34.3     25     44GO:0005885; C:Arp2/3 protein complex; TAS:MGI.::GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.
GO:0030833; P:regulation of actin filament polymerization; IEA:InterPro.
874Q55BR7    1509   RPTOR_DICDI Protein raptor homolog OS=Dictyos...1041.1     34.7     24     48
GO:0005488; F:binding; IEA:InterPro.
875Q8TBZ3    569   WDR20_HUMAN WD repeat-containing protein 20 O...1211.1     34.7     27     42
876Q6C709    441   PRP46_YARLI Pre-mRNA-splicing factor PRP46 OS...1923.5     32.7     26     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
877Q6CXX3    861   HIR1_KLULA Protein HIR1 OS=1267 / NRRL Y-1140...791.5     34.3     33     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
878Q99PD4    370   ARC1A_RAT Actin-related protein 2/3 complex s...1091.1     34.3     25     44GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.
GO:0030833; P:regulation of actin filament polymerization; IEA:InterPro.
879Q9P7I3    651   MDV1_SCHPO Mitochondrial division protein 1 O...671.1     34.7     33     49GO:0030015; C:CCR4-NOT core complex; NAS:PomBase.::GO:0005741; C:mitochondrial outer membrane; ISS:PomBase.
GO:0051020; F:GTPase binding; NAS:PomBase.
GO:0000266; P:mitochondrial fission; ISS:PomBase.::GO:0000002; P:mitochondrial genome maintenance; ISS:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; ISS:PomBase.::GO:0006354; P:transcription elongation, DNA-dependent; IC:PomBase.
880Q9FNZ1    443   C3H63_ARATH Zinc finger CCCH domain-containin...1961.1     34.3     26     37
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
881Q3TWF6    657   WDR70_MOUSE WD repeat-containing protein 70 O...2211.1     34.7     24     40
882Q803V5    326   LST8_DANRE Target of rapamycin complex subuni...2531.1     34.3     20     34GO:0005737; C:cytoplasm; ISS:UniProtKB.
883Q7ZY78    396   WDR4_XENLA tRNA (guanine-N(7)-)-methyltransfe...991.2     34.3     26     46GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0006400; P:tRNA modification; ISS:UniProtKB.
884Q4X0M4    1263   SEC31_ASPFU Protein transport protein sec31 O...2081.3     34.7     21     40GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
885Q6ZQL4    677   WDR43_MOUSE WD repeat-containing protein 43 O...1251.3     34.3     26     41GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
886P49178    380   GBB_MAIZE Guanine nucleotide-binding protein ...2811.3     34.3     23     36
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
887Q8CIE6    1224   COPA_MOUSE Coatomer subunit alpha OS=Mus musc...811.3     34.7     32     44GO:0030126; C:COPI vesicle coat; IEA:InterPro.::GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
GO:0005179; F:hormone activity; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
888O75083    606   WDR1_HUMAN WD repeat-containing protein 1 OS=...891.3     34.3     27     46GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005576; C:extracellular region; TAS:Reactome.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.
GO:0030168; P:platelet activation; TAS:Reactome.::GO:0002576; P:platelet degranulation; TAS:Reactome.::GO:0007605; P:sensory perception of sound; TAS:ProtInc.
889Q27954    1224   COPA_BOVIN Coatomer subunit alpha OS=Bos taur...2761.4     34.3     24     38GO:0030126; C:COPI vesicle coat; IDA:UniProtKB.::GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
GO:0005179; F:hormone activity; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006891; P:intra-Golgi vesicle-mediated transport; TAS:UniProtKB.::GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; TAS:UniProtKB.
890Q6FXI8    419   HAT2_CANGA Histone acetyltransferase type B s...1041.3     34.3     21     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
891Q6P1W0    713   DTL_XENTR Denticleless protein homolog OS=Xen...1121.4     34.3     23     38GO:0005813; C:centrosome; ISS:UniProtKB.::GO:0031464; C:Cul4A-RING ubiquitin ligase complex; ISS:UniProtKB.::GO:0031465; C:Cul4B-RING ubiquitin ligase complex; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006513; P:protein monoubiquitination; ISS:UniProtKB.::GO:0000209; P:protein polyubiquitination; ISS:UniProtKB.::GO:0009411; P:response to UV; ISS:UniProtKB.::GO:0019985; P:translesion synthesis; ISS:UniProtKB.::GO:0006511; P:ubiquitin-dependent protein catabolic process; ISS:UniProtKB.
892P79083    328   EIF3I_SCHPO Eukaryotic translation initiation...548     31.6     28     54GO:0005829; C:cytosol; IDA:PomBase.::GO:0016282; C:eukaryotic 43S preinitiation complex; IDA:PomBase.::GO:0071540; C:eukaryotic translation initiation factor 3 complex, eIF3e; IDA:PomBase.::GO:0071541; C:eukaryotic translation initiation factor 3 complex, eIF3m; IDA:PomBase.::GO:0034399; C:nuclear periphery; IDA:PomBase.
GO:0005515; F:protein binding; IPI:PomBase.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
GO:0065007; P:biological regulation; NAS:PomBase.::GO:0071470; P:cellular response to osmotic stress; IMP:PomBase.::GO:0002183; P:cytoplasmic translational initiation; NAS:PomBase.
893Q54QU5    359   WDR89_DICDI WD repeat-containing protein 89 h...961.4     33.9     29     44
894P53621    1224   COPA_HUMAN Coatomer subunit alpha OS=Homo sap...2761.4     34.3     24     38GO:0030126; C:COPI vesicle coat; ISS:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005615; C:extracellular space; IDA:MGI.::GO:0005792; C:microsome; IDA:MGI.::GO:0005625; C:soluble fraction; IDA:MGI.
GO:0005179; F:hormone activity; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0048205; P:COPI coating of Golgi vesicle; TAS:Reactome.::GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0030157; P:pancreatic juice secretion; IDA:MGI.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; TAS:Reactome.
895Q00659    678   SCONB_EMENI Probable E3 ubiquitin ligase comp...1992.4     33.5     26     38
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
896Q05B30    751   WDR91_XENTR WD repeat-containing protein 91 O...651.5     34.3     38     51
897Q6ZS81    3184   WDFY4_HUMAN WD repeat- and FYVE domain-contai...1351.5     34.3     27     41GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
898Q92747    370   ARC1A_HUMAN Actin-related protein 2/3 complex...1091.5     33.9     25     44GO:0015629; C:actin cytoskeleton; TAS:ProtInc.::GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
GO:0003779; F:actin binding; TAS:ProtInc.
GO:0030036; P:actin cytoskeleton organization; TAS:ProtInc.::GO:0030833; P:regulation of actin filament polymerization; IEA:InterPro.
899Q6NRH1    601   DCAF8_XENLA DDB1- and CUL4-associated factor ...861.5     34.3     30     49
900A3LQ86    467   YTM1_PICST Ribosome biogenesis protein YTM1 O...2281.6     33.9     23     36GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
901Q9LPV9    346   LWD1_ARATH WD repeat-containing protein LWD1 ...921.6     33.9     26     53GO:0005634; C:nucleus; IDA:TAIR.
GO:0044212; F:transcription regulatory region DNA binding; IDA:TAIR.
GO:0009718; P:anthocyanin biosynthetic process; NAS:TAIR.::GO:0043153; P:entrainment of circadian clock by photoperiod; IEP:TAIR.::GO:0048573; P:photoperiodism, flowering; IMP:TAIR.::GO:0048511; P:rhythmic process; IEA:UniProtKB-KW.
records
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