Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR208W
Length:
297
Number of sequences:
5887
Description:
YLR208W SEC13 SGDID:S000004198, Chr XII from 559551-560444, Genome Release 64-1-1, Verified ORF, "Component of the Nup84 nuclear pore sub-complex, the Sec13p-Sec31p complex of the COPII vesicle coat, and the SEA (Seh1-associated) complex; required for vesicle formation in ER to Golgi transport and nuclear pore complex organization; the Nup84 subcomplex has a role in transcription elongation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
811Q9USR0    404   CKN1_SCHPO DNA excision repair protein ckn1 O...900.44     35.8     30     48GO:0005829; C:cytosol; IDA:PomBase.::GO:0070912; C:Ddb1-Ckn1 complex; IDA:PomBase.
GO:0006283; P:transcription-coupled nucleotide-excision repair; IMP:PomBase.
812Q6DDF0    495   WDR37_XENLA WD repeat-containing protein 37 O...2200.44     35.8     26     40
813Q8N157    1196   AHI1_HUMAN Jouberin OS=Homo sapiens (Human). ...1730.45     35.8     22     46GO:0005912; C:adherens junction; IDA:UniProtKB.::GO:0005911; C:cell-cell junction; IDA:UniProtKB.::GO:0005814; C:centriole; ISS:UniProtKB.::GO:0005932; C:microtubule basal body; IDA:UniProtKB.::GO:0036038; C:TCTN-B9D complex; ISS:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0042384; P:cilium assembly; ISS:UniProtKB.::GO:0035844; P:cloaca development; ISS:UniProtKB.::GO:0001947; P:heart looping; ISS:UniProtKB.::GO:0030902; P:hindbrain development; ISS:UniProtKB.::GO:0070121; P:Kupffer's vesicle development; ISS:UniProtKB.::GO:0070986; P:left/right axis specification; ISS:UniProtKB.::GO:0001738; P:morphogenesis of a polarized epithelium; ISS:UniProtKB.::GO:0043066; P:negative regulation of apoptotic process; ISS:UniProtKB.::GO:0071599; P:otic vesicle development; ISS:UniProtKB.::GO:0035845; P:photoreceptor cell outer segment organization; ISS:UniProtKB.::GO:0030862; P:positive regulation of polarized epithelial cell differentiation; ISS:UniProtKB.::GO:0002092; P:positive regulation of receptor internalization; ISS:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0039023; P:pronephric duct morphogenesis; ISS:UniProtKB.::GO:0039008; P:pronephric nephron tubule morphogenesis; ISS:UniProtKB.::GO:0050795; P:regulation of behavior; ISS:UniProtKB.::GO:0010842; P:retina layer formation; ISS:UniProtKB.::GO:0065001; P:specification of axis polarity; ISS:UniProtKB.::GO:0007169; P:transmembrane receptor protein tyrosine kinase signaling pathway; ISS:UniProtKB.::GO:0016192; P:vesicle-mediated transport; ISS:UniProtKB.
814Q94A40    1216   COPA1_ARATH Coatomer subunit alpha-1 OS=Arabi...2621.4     34.3     24     41GO:0030126; C:COPI vesicle coat; IEA:InterPro.::GO:0005829; C:cytosol; IDA:TAIR.::GO:0005886; C:plasma membrane; IDA:TAIR.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
815Q13216    396   ERCC8_HUMAN DNA excision repair protein ERCC-...1210.49     35.4     26     46GO:0031464; C:Cul4A-RING ubiquitin ligase complex; IDA:UniProtKB.::GO:0016363; C:nuclear matrix; IDA:MGI.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0000109; C:nucleotide-excision repair complex; IDA:MGI.::GO:0005625; C:soluble fraction; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0032403; F:protein complex binding; IDA:UniProtKB.
GO:0045739; P:positive regulation of DNA repair; IMP:UniProtKB.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IDA:UniProtKB.::GO:0051865; P:protein autoubiquitination; IDA:UniProtKB.::GO:0000209; P:protein polyubiquitination; IDA:UniProtKB.::GO:0006979; P:response to oxidative stress; IDA:UniProtKB.::GO:0009411; P:response to UV; IDA:UniProtKB.::GO:0006283; P:transcription-coupled nucleotide-excision repair; IMP:UniProtKB.
816A8XSW2    691   WDR48_CAEBR WD repeat-containing protein 48 h...903     33.1     29     43
817O94527    809   YBU3_SCHPO Uncharacterized WD repeat-containi...890.51     35.8     28     47GO:0005829; C:cytosol; IDA:PomBase.::GO:0043234; C:protein complex; NAS:PomBase.
818C5DJV1    1290   RTC1_LACTC Restriction of telomere capping pr...1210.52     35.8     21     44GO:0005773; C:vacuole; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
819Q8CFD5    397   ERCC8_MOUSE DNA excision repair protein ERCC-...1220.55     35.4     27     48
GO:0009411; P:response to UV; IMP:MGI.::GO:0010165; P:response to X-ray; IMP:MGI.
820P38123    315   SWD3_YEAST COMPASS component SWD3 OS=Saccharo...2240.55     35     26     41GO:0000781; C:chromosome, telomeric region; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0006348; P:chromatin silencing at telomere; IMP:SGD.::GO:0051568; P:histone H3-K4 methylation; IDA:SGD.::GO:0000723; P:telomere maintenance; IMP:SGD.
821A2QVV2    591   CREC_ASPNC Probable catabolite repression pro...1580.56     35.4     25     41
GO:0045013; P:carbon catabolite repression of transcription; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
822Q7ZUV2    694   KTNB1_DANRE Katanin p80 WD40-containing subun...1130.57     35.4     33     50GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.
823Q06440    651   CORO_YEAST Coronin-like protein OS=Saccharomy...820.58     35.4     35     49GO:0030479; C:actin cortical patch; IDA:SGD.::GO:0005826; C:actomyosin contractile ring; IBA:RefGenome.
GO:0051015; F:actin filament binding; IDA:SGD.::GO:0008017; F:microtubule binding; IDA:SGD.::GO:0030674; F:protein binding, bridging; IDA:SGD.
GO:0051666; P:actin cortical patch localization; IMP:SGD.::GO:0007015; P:actin filament organization; IMP:SGD.::GO:0007017; P:microtubule-based process; IPI:SGD.::GO:0034316; P:negative regulation of Arp2/3 complex-mediated actin nucleation; IDA:SGD.::GO:2000601; P:positive regulation of Arp2/3 complex-mediated actin nucleation; IDA:SGD.
824Q552R1    325   DCAF7_DICDI DDB1- and CUL4-associated factor ...1220.58     35     23     43
825Q9NRL3    753   STRN4_HUMAN Striatin-4 OS=Homo sapiens (Human...1320.58     35.4     32     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
GO:0070016; F:armadillo repeat domain binding; IPI:UniProtKB.::GO:0005516; F:calmodulin binding; NAS:UniProtKB.::GO:0032403; F:protein complex binding; IDA:UniProtKB.::GO:0051721; F:protein phosphatase 2A binding; IDA:UniProtKB.
826P49026    326   GBLP_TOBAC Guanine nucleotide-binding protein...1200.59     35     28     48
827Q8BX17    1502   GEMI5_MOUSE Gem-associated protein 5 OS=Mus m...1220.59     35.4     29     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0017069; F:snRNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
828Q8SRB0    334   GBLP_ENCCU Guanine nucleotide-binding protein...2030.6     35     24     38
829Q5ZMA2    505   PRP19_CHICK Pre-mRNA-processing factor 19 OS=...700.61     35.4     33     54GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005819; C:spindle; IEA:UniProtKB-SubCell.::GO:0000151; C:ubiquitin ligase complex; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004842; F:ubiquitin-protein ligase activity; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
830A1DHK2    1263   SEC31_NEOFI Protein transport protein sec31 O...2080.62     35.4     21     40GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
831Q55FR9    1221   COPA_DICDI Coatomer subunit alpha OS=Dictyost...670.63     35.4     33     51GO:0030126; C:COPI vesicle coat; IEA:InterPro.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.
832B6Q4Z5    660   SCONB_PENMQ Probable E3 ubiquitin ligase comp...1990.64     35.4     25     40
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
833Q55GE6    2615   ROCO7_DICDI Probable serine/threonine-protein...1370.65     35.4     28     48GO:0005622; C:intracellular; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0005096; F:GTPase activator activity; IEA:InterPro.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
GO:0051056; P:regulation of small GTPase mediated signal transduction; IEA:InterPro.
834Q803X4    445   DCA13_DANRE DDB1- and CUL4-associated factor ...2890.65     35     24     39GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:UniProtKB.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
835Q09019    674   DMWD_HUMAN Dystrophia myotonica WD repeat-con...1190.65     35.4     27     40
GO:0007126; P:meiosis; NAS:UniProtKB.
836Q08924    1013   WDR6_YEAST Regulator of Ty1 transposition pro...890.65     35.4     27     55GO:0005768; C:endosome; IDA:SGD.
GO:0032456; P:endocytic recycling; IMP:SGD.
837Q0CQ54    999   HIR1_ASPTN Protein hir1 OS=Aspergillus terreu...1923.5     33.1     23     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
838O94423    421   MFR1_SCHPO Meiotic fizzy-related protein 1 OS...1860.68     35     25     42GO:0005634; C:nucleus; IDA:PomBase.::GO:0043234; C:protein complex; NAS:PomBase.
GO:0005515; F:protein binding; IPI:PomBase.
GO:0051487; P:activation of anaphase-promoting complex activity involved in meiotic cell cycle; IGI:PomBase.::GO:0030437; P:ascospore formation; IMP:PomBase.::GO:0007138; P:meiotic anaphase II; IMP:PomBase.
839Q7RZI0    1035   HIR1_NEUCR Protein hir-1 OS=1257 / FGSC 987)....1361.9     33.9     23     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
840Q10281    314   GBLP_SCHPO Guanine nucleotide-binding protein...1720.71     35     26     41GO:0005737; C:cytoplasm; ISS:PomBase.::GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
GO:0005080; F:protein kinase C binding; IPI:PomBase.::GO:0043022; F:ribosome binding; IDA:PomBase.
GO:0034613; P:cellular protein localization; IGI:PomBase.::GO:0035556; P:intracellular signal transduction; IMP:PomBase.::GO:2000766; P:negative regulation of cytoplasmic translation; ISS:PomBase.::GO:0031139; P:positive regulation of conjugation with cellular fusion; IMP:PomBase.::GO:0032956; P:regulation of actin cytoskeleton organization; IGI:PomBase.::GO:0032995; P:regulation of fungal-type cell wall biogenesis; IGI:PomBase.
841Q6L4F8    336   GBLPB_ORYSJ Guanine nucleotide-binding protei...1230.71     35     28     45
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
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