Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR208W
Length:
297
Number of sequences:
5887
Description:
YLR208W SEC13 SGDID:S000004198, Chr XII from 559551-560444, Genome Release 64-1-1, Verified ORF, "Component of the Nup84 nuclear pore sub-complex, the Sec13p-Sec31p complex of the COPII vesicle coat, and the SEA (Seh1-associated) complex; required for vesicle formation in ER to Golgi transport and nuclear pore complex organization; the Nup84 subcomplex has a role in transcription elongation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
691A7TH19    347   EIF3I_VANPO Eukaryotic translation initiation...2310.067     38.1     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
692C7GWC1    494   LIS1_YEAS2 Nuclear distribution protein PAC1 ...2340.068     38.1     24     36GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
693Q9C270    899   PWP2_NEUCR Periodic tryptophan protein 2 homo...462     33.9     43     61
694Q91V09    485   WDR13_MOUSE WD repeat-containing protein 13 O...660.34     36.2     33     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
695Q9H1Z4    485   WDR13_HUMAN WD repeat-containing protein 13 O...660.29     36.2     33     47GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005634; C:nucleus; IDA:HPA.
696B2VZH2    460   YTM1_PYRTR Ribosome biogenesis protein ytm1 O...730.075     38.1     32     55GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
697O13615    473   PRP46_SCHPO Pre-mRNA-splicing factor prp5 OS=...620.075     38.1     39     48GO:0005681; C:spliceosomal complex; IDA:PomBase.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IMP:PomBase.
698Q6H8D6    910   COB23_ORYSJ Putative coatomer subunit beta'-3...651.5     34.3     29     58GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
699Q6BYU4    985   HIR1_DEBHA Protein HIR1 OS=0083 / IGC 2968) (...680.076     38.5     31     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
700P20484    468   MAK11_YEAST Protein MAK11 OS=Saccharomyces ce...1010.077     38.1     26     49GO:0005624; C:membrane fraction; IDA:SGD.::GO:0031965; C:nuclear membrane; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000466; P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000027; P:ribosomal large subunit assembly; IMP:SGD.
701O94365    494   UTP15_SCHPO U3 small nucleolar RNA-associated...1020.077     38.1     29     44GO:0005829; C:cytosol; IDA:PomBase.::GO:0032040; C:small-subunit processome; ISS:PomBase.::GO:0005819; C:spindle; IDA:PomBase.::GO:0034455; C:t-UTP complex; ISS:PomBase.
GO:0030515; F:snoRNA binding; ISS:PomBase.
GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
702B4MFM2    667   WDR48_DROVI WD repeat-containing protein 48 h...1131.3     34.3     24     44
703Q6DKP5    485   WDR13_PANTR WD repeat-containing protein 13 O...660.31     36.2     33     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
704Q5RF24    485   WDR13_PONAB WD repeat-containing protein 13 O...660.32     36.2     33     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
705Q5BLX8    315   WDR83_RAT WD repeat domain-containing protein...920.085     37.7     30     48GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
706B4QB64    668   WDR48_DROSI WD repeat-containing protein 48 h...1130.12     37.7     25     46
707A1DMI8    603   CREC_NEOFI Probable catabolite repression pro...1580.086     38.1     25     42
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
708Q9GZL7    423   WDR12_HUMAN Ribosome biogenesis protein WDR12...3120.087     37.7     25     39GO:0005654; C:nucleoplasm; IDA:UniProtKB.::GO:0070545; C:PeBoW complex; IDA:UniProtKB.::GO:0030687; C:preribosome, large subunit precursor; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0008283; P:cell proliferation; IMP:UniProtKB.::GO:0000466; P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:UniProtKB.::GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:UniProtKB.
709B4KRQ4    679   WDR48_DROMO WD repeat-containing protein 48 h...1130.53     35.4     25     44
710Q6VNB8    3508   WDFY3_MOUSE WD repeat and FYVE domain-contain...640.093     38.1     36     52
GO:0003831; F:beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity; IDA:MGI.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
711Q5NVM2    638   DC1I2_PONAB Cytoplasmic dynein 1 intermediate...2370.093     38.1     24     40GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0030286; C:dynein complex; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0031982; C:vesicle; ISS:UniProtKB.
GO:0003774; F:motor activity; IEA:UniProtKB-KW.
GO:0006810; P:transport; IEA:UniProtKB-KW.
712Q13409    638   DC1I2_HUMAN Cytoplasmic dynein 1 intermediate...2370.093     38.1     24     40GO:0005813; C:centrosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0030286; C:dynein complex; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0031982; C:vesicle; IDA:UniProtKB.
GO:0003777; F:microtubule motor activity; NAS:UniProtKB.
GO:0000086; P:G2/M transition of mitotic cell cycle; TAS:Reactome.::GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0007018; P:microtubule-based movement; NAS:UniProtKB.::GO:0006810; P:transport; IEA:UniProtKB-KW.
713Q8TEQ6    1508   GEMI5_HUMAN Gem-associated protein 5 OS=Homo ...2280.68     35.4     22     36GO:0015030; C:Cajal body; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0017069; F:snRNA binding; IDA:UniProtKB.
GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0006461; P:protein complex assembly; TAS:UniProtKB.::GO:0000387; P:spliceosomal snRNP assembly; TAS:UniProtKB.
714Q54RP0    648   AGTA_DICDI UDP-galactose:fucoside alpha-3-gal...690.099     37.7     35     43GO:0005737; C:cytoplasm; TAS:dictyBase.
GO:0004381; F:fucosylgalactoside 3-alpha-galactosyltransferase activity; IEA:EC.
GO:0006486; P:protein glycosylation; IDA:dictyBase.
715P54198    1017   HIRA_HUMAN Protein HIRA OS=Homo sapiens (Huma...1670.1     38.1     25     37GO:0016605; C:PML body; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; TAS:ProtInc.::GO:0003714; F:transcription corepressor activity; TAS:ProtInc.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; TAS:ProtInc.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
716Q42384    486   PRL1_ARATH Protein pleiotropic regulatory loc...680.1     37.7     40     50GO:0080008; C:CUL4 RING ubiquitin ligase complex; IPI:TAIR.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0048825; P:cotyledon development; IMP:TAIR.::GO:0009870; P:defense response signaling pathway, resistance gene-dependent; IMP:TAIR.::GO:0010204; P:defense response signaling pathway, resistance gene-independent; IMP:TAIR.::GO:0042742; P:defense response to bacterium; IMP:TAIR.::GO:0050832; P:defense response to fungus; IMP:TAIR.::GO:0009755; P:hormone-mediated signaling pathway; IMP:TAIR.::GO:0045087; P:innate immune response; IEA:UniProtKB-KW.::GO:0048366; P:leaf development; IMP:TAIR.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IMP:TAIR.::GO:0006508; P:proteolysis; IMP:TAIR.::GO:0009749; P:response to glucose stimulus; IMP:TAIR.::GO:0048364; P:root development; IMP:TAIR.::GO:0010182; P:sugar mediated signaling pathway; IMP:TAIR.
717Q27GK7    1135   TPR4_ARATH Topless-related protein 4 OS=Arabi...830.1     38.1     30     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:TAIR.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
718Q873A1    1256   SEC31_NEUCR Protein transport protein sec-31 ...1111.7     34.3     27     43GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
719Q61666    1015   HIRA_MOUSE Protein HIRA OS=Mus musculus (Mous...1670.1     38.1     25     37GO:0000790; C:nuclear chromatin; IDA:MGI.::GO:0016605; C:PML body; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:MGI.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0007369; P:gastrulation; IMP:MGI.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
720Q0WV90    1120   TPR1_ARATH Topless-related protein 1 OS=Arabi...960.1     38.1     28     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
721B4HND9    680   WDR48_DROSE WD repeat-containing protein 48 h...1130.13     37.4     25     46
records
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