Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR208W
Length:
297
Number of sequences:
5887
Description:
YLR208W SEC13 SGDID:S000004198, Chr XII from 559551-560444, Genome Release 64-1-1, Verified ORF, "Component of the Nup84 nuclear pore sub-complex, the Sec13p-Sec31p complex of the COPII vesicle coat, and the SEA (Seh1-associated) complex; required for vesicle formation in ER to Golgi transport and nuclear pore complex organization; the Nup84 subcomplex has a role in transcription elongation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
601Q5R654    426   RBBP7_PONAB Histone-binding protein RBBP7 OS=...1162.1     33.5     27     44GO:0035098; C:ESC/E(Z) complex; ISS:UniProtKB.::GO:0016581; C:NuRD complex; ISS:UniProtKB.
GO:0070370; P:cellular heat acclimation; ISS:UniProtKB.::GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0030308; P:negative regulation of cell growth; ISS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
602Q9NRJ4    1543   TULP4_HUMAN Tubby-related protein 4 OS=Homo s...1710.019     40.4     26     41GO:0005737; C:cytoplasm; IDA:MGI.
GO:0003700; F:sequence-specific DNA binding transcription factor activity; NAS:UniProtKB.
GO:0035556; P:intracellular signal transduction; IEA:InterPro.::GO:0007584; P:response to nutrient; TAS:ProtInc.
603Q9LV28    326   GPLPC_ARATH Guanine nucleotide-binding protei...1990.35     35.8     21     41GO:0005730; C:nucleolus; IDA:TAIR.
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
GO:0071215; P:cellular response to abscisic acid stimulus; IEP:TAIR.::GO:0048364; P:root development; IGI:TAIR.::GO:0048367; P:shoot development; IGI:TAIR.
604E9PYY5    807   WDR78_MOUSE WD repeat-containing protein 78 O...1560.019     40     23     44
605Q9JIL5    1547   TULP4_MOUSE Tubby-related protein 4 OS=Mus mu...1710.02     40.4     25     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0035556; P:intracellular signal transduction; IEA:InterPro.
606Q6CGP9    532   PFS2_YARLI Polyadenylation factor subunit 2 O...2200.02     40     23     40GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
607P87053    605   POF1_SCHPO F-box/WD repeat-containing protein...1870.11     37.7     25     41GO:0000152; C:nuclear ubiquitin ligase complex; ISS:PomBase.::GO:0019005; C:SCF ubiquitin ligase complex; IDA:PomBase.
GO:0030674; F:protein binding, bridging; IPI:PomBase.
GO:0071276; P:cellular response to cadmium ion; IEP:PomBase.::GO:0042787; P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process; IPI:PomBase.::GO:0007346; P:regulation of mitotic cell cycle; IC:PomBase.
608Q29RH4    351   THOC3_BOVIN THO complex subunit 3 OS=Bos taur...1250.022     39.7     26     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
609Q9Y6I7    421   WSB1_HUMAN WD repeat and SOCS box-containing ...870.56     35.4     25     45GO:0005622; C:intracellular; IDA:LIFEdb.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0035556; P:intracellular signal transduction; IEA:InterPro.
610Q58CQ2    372   ARC1B_BOVIN Actin-related protein 2/3 complex...2002.2     33.5     20     38GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.
GO:0030833; P:regulation of actin filament polymerization; IEA:InterPro.
611Q6FVD3    840   HIR1_CANGA Protein HIR1 OS=NRRL Y-65) (Yeast)...840.16     37.4     29     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
612Q96J01    351   THOC3_HUMAN THO complex subunit 3 OS=Homo sap...1250.023     39.7     26     45GO:0000346; C:transcription export complex; IDA:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0046784; P:intronless viral mRNA export from host nucleus; IDA:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
613Q55CT5    1355   SEC31_DICDI Protein transport protein SEC31 O...1310.023     40     23     40GO:0030127; C:COPII vesicle coat; ISS:dictyBase.::GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:InterPro.
GO:0006888; P:ER to Golgi vesicle-mediated transport; ISS:dictyBase.::GO:0006886; P:intracellular protein transport; ISS:dictyBase.::GO:0008380; P:RNA splicing; IEA:InterPro.
614Q9P783    480   RRB1_SCHPO Ribosome assembly protein rrb1 OS=...1099.3     31.6     23     48GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; ISS:PomBase.::GO:0043234; C:protein complex; NAS:PomBase.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
615Q8VE80    351   THOC3_MOUSE THO complex subunit 3 OS=Mus musc...1250.024     39.7     26     45
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
616Q8VZS9    475   FZR1_ARATH Protein FIZZY-RELATED 1 OS=Arabido...1710.025     39.7     25     44GO:0005737; C:cytoplasm; IDA:TAIR.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0032877; P:positive regulation of DNA endoreduplication; IMP:TAIR.
617Q0UNC6    1044   HIR1_PHANO Protein HIR1 OS=(Glume blotch fung...2650.025     40     23     37GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
618Q0V8F1    915   CORO7_BOVIN Coronin-7 OS=Bos taurus (Bovine)....1220.025     39.7     28     47GO:0016023; C:cytoplasmic membrane-bounded vesicle; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
619Q8IZQ1    3526   WDFY3_HUMAN WD repeat and FYVE domain-contain...640.026     40     38     53GO:0044444; C:cytoplasmic part; IDA:MGI.::GO:0019898; C:extrinsic to membrane; IDA:MGI.::GO:0005635; C:nuclear envelope; IDA:MGI.
GO:0005545; F:1-phosphatidylinositol binding; IDA:MGI.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
620Q9VU68    608   WDR1_DROME Actin-interacting protein 1 OS=Dro...2540.051     38.9     22     39GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005856; C:cytoskeleton; IDA:UniProtKB.
GO:0003779; F:actin binding; ISS:FlyBase.
GO:0030042; P:actin filament depolymerization; IMP:FlyBase.::GO:0001736; P:establishment of planar polarity; IMP:UniProtKB.::GO:0035317; P:imaginal disc-derived wing hair organization; IMP:FlyBase.::GO:0006911; P:phagocytosis, engulfment; IMP:FlyBase.::GO:0030834; P:regulation of actin filament depolymerization; IMP:UniProtKB.::GO:0045214; P:sarcomere organization; IMP:FlyBase.
621Q9UUG8    598   TUP12_SCHPO Transcriptional repressor tup12 O...2170.026     39.7     24     41GO:0005829; C:cytosol; IDA:PomBase.::GO:0000790; C:nuclear chromatin; IC:PomBase.::GO:0043234; C:protein complex; NAS:PomBase.
GO:0042393; F:histone binding; IDA:PomBase.::GO:0003714; F:transcription corepressor activity; IDA:PomBase.
GO:0043156; P:chromatin remodeling in response to cation stress; IMP:PomBase.::GO:0006342; P:chromatin silencing; IMP:PomBase.::GO:0045014; P:negative regulation of transcription by glucose; IMP:PomBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
622P25635    923   PWP2_YEAST Periodic tryptophan protein 2 OS=S...1730.17     37.4     25     42GO:0005737; C:cytoplasm; IDA:SGD.::GO:0034388; C:Pwp2p-containing subcomplex of 90S preribosome; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0030515; F:snoRNA binding; IPI:SGD.
GO:0000910; P:cytokinesis; IMP:SGD.::GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0030010; P:establishment of cell polarity; IMP:SGD.
623P35606    906   COPB2_HUMAN Coatomer subunit beta' OS=Homo sa...726.8     32     28     47GO:0015629; C:actin cytoskeleton; IDA:HPA.::GO:0030126; C:COPI vesicle coat; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0048205; P:COPI coating of Golgi vesicle; TAS:Reactome.::GO:0006891; P:intra-Golgi vesicle-mediated transport; IDA:UniProtKB.::GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; TAS:UniProtKB.
624P61963    342   DCAF7_MOUSE DDB1- and CUL4-associated factor ...1530.027     39.3     21     42GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
625P61962    342   DCAF7_HUMAN DDB1- and CUL4-associated factor ...1530.027     39.3     21     42GO:0080008; C:CUL4 RING ubiquitin ligase complex; IDA:UniProtKB.::GO:0005737; C:cytoplasm; TAS:UniProtKB.::GO:0005634; C:nucleus; IDA:HPA.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0016567; P:protein ubiquitination; IC:UniProtKB.
626Q9Y2I8    494   WDR37_HUMAN WD repeat-containing protein 37 O...1962.8     33.1     25     40
627Q4R4I8    906   COPB2_MACFA Coatomer subunit beta' OS=Macaca ...726.6     32.3     28     49GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
628P97499    2629   TEP1_MOUSE Telomerase protein component 1 OS=...2650.027     40     25     42GO:0000781; C:chromosome, telomeric region; IEA:UniProtKB-SubCell.::GO:0005625; C:soluble fraction; IDA:MGI.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IMP:UniProtKB.
629B8M7Q5    667   SCONB_TALSN Probable E3 ubiquitin ligase comp...1991.2     34.3     25     40
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
630Q09150    302   REC14_SCHPO Meiotic recombination protein rec...1120.027     39.3     29     46GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.::GO:0055087; C:Ski complex; ISS:PomBase.
GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0007131; P:reciprocal meiotic recombination; IMP:PomBase.
631P35605    906   COPB2_BOVIN Coatomer subunit beta' OS=Bos tau...727     32     28     49GO:0030126; C:COPI vesicle coat; IDA:UniProtKB.
GO:0005080; F:protein kinase C binding; ISS:AgBase.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006891; P:intra-Golgi vesicle-mediated transport; TAS:UniProtKB.::GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; TAS:UniProtKB.
records
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