Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR208W
Length:
297
Number of sequences:
5887
Description:
YLR208W SEC13 SGDID:S000004198, Chr XII from 559551-560444, Genome Release 64-1-1, Verified ORF, "Component of the Nup84 nuclear pore sub-complex, the Sec13p-Sec31p complex of the COPII vesicle coat, and the SEA (Seh1-associated) complex; required for vesicle formation in ER to Golgi transport and nuclear pore complex organization; the Nup84 subcomplex has a role in transcription elongation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
511Q5E9I7    342   MEP50_BOVIN Methylosome protein 50 OS=Bos tau...2340.003     42.4     24     40GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
512O94289    713   LUB1_SCHPO Ubiquitin homeostasis protein lub1...1210.15     37.4     29     47GO:0005737; C:cytoplasm; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.::GO:0043234; C:protein complex; NAS:PomBase.
GO:0043130; F:ubiquitin binding; ISS:PomBase.
GO:0006281; P:DNA repair; ISS:PomBase.::GO:0016574; P:histone ubiquitination; NAS:PomBase.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IMP:PomBase.
513Q8C0P5    524   COR2A_MOUSE Coronin-2A OS=Mus musculus (Mouse...1190.003     42.4     32     44GO:0015629; C:actin cytoskeleton; IBA:RefGenome.::GO:0017053; C:transcriptional repressor complex; IBA:RefGenome.
GO:0051015; F:actin filament binding; IBA:RefGenome.
GO:0030036; P:actin cytoskeleton organization; IBA:RefGenome.
514Q5RBZ2    342   MEP50_PONAB Methylosome protein 50 OS=Pongo a...2150.003     42     23     43GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
515Q4R4J2    461   COR1A_MACFA Coronin-1A OS=Macaca fascicularis...944.1     32.7     29     43GO:0005938; C:cell cortex; IEA:UniProtKB-SubCell.::GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.::GO:0030670; C:phagocytic vesicle membrane; IEA:UniProtKB-SubCell.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.
516O08653    2629   TEP1_RAT Telomerase protein component 1 OS=Ra...2670.004     42.7     25     42GO:0000781; C:chromosome, telomeric region; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
517A5DVY3    350   EIF3I_LODEL Eukaryotic translation initiation...2680.004     42     28     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
518Q54ED4    482   GRWD1_DICDI Glutamate-rich WD repeat-containi...1019.4     31.6     28     47GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
519Q54PE0    922   PWP2_DICDI Periodic tryptophan protein 2 homo...2340.004     42.4     24     43GO:0005829; C:cytosol; ISS:dictyBase.::GO:0005730; C:nucleolus; ISS:dictyBase.
GO:0030515; F:snoRNA binding; ISS:dictyBase.
GO:0006364; P:rRNA processing; ISS:dictyBase.
520Q6BVZ3    504   PFS2_DEBHA Polyadenylation factor subunit 2 O...1570.004     42.4     25     40GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
521Q28D01    614   WDR26_XENTR WD repeat-containing protein 26 O...920.037     39.3     34     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
522O62621    914   COPB2_DROME Coatomer subunit beta' OS=Drosoph...2110.004     42.4     26     40GO:0030126; C:COPI vesicle coat; NAS:UniProtKB.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006888; P:ER to Golgi vesicle-mediated transport; NAS:UniProtKB.::GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0010883; P:regulation of lipid storage; IDA:FlyBase.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; NAS:UniProtKB.
523P53699    684   CDC4_CANAX Cell division control protein 4 OS...2640.004     42.4     25     38
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0030435; P:sporulation resulting in formation of a cellular spore; IEA:UniProtKB-KW.
524Q9D2V7    922   CORO7_MOUSE Coronin-7 OS=Mus musculus (Mouse)...1120.004     42.4     31     46GO:0016023; C:cytoplasmic membrane-bounded vesicle; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.::GO:0000299; C:integral to membrane of membrane fraction; IDA:MGI.::GO:0005625; C:soluble fraction; IDA:MGI.
525Q92176    461   COR1A_BOVIN Coronin-1A OS=Bos taurus (Bovine)...1600.061     38.5     26     41GO:0030864; C:cortical actin cytoskeleton; ISS:RefGenome.::GO:0030027; C:lamellipodium; ISS:RefGenome.::GO:0001891; C:phagocytic cup; ISS:RefGenome.::GO:0030670; C:phagocytic vesicle membrane; IEA:UniProtKB-SubCell.
GO:0051015; F:actin filament binding; ISS:RefGenome.
GO:0030595; P:leukocyte chemotaxis; ISS:RefGenome.::GO:0051126; P:negative regulation of actin nucleation; ISS:RefGenome.::GO:0001845; P:phagolysosome assembly; ISS:RefGenome.::GO:0050918; P:positive chemotaxis; ISS:RefGenome.::GO:0008360; P:regulation of cell shape; ISS:RefGenome.::GO:0032796; P:uropod organization; ISS:RefGenome.
526Q05946    817   UTP13_YEAST U3 small nucleolar RNA-associated...3110.075     38.5     22     39GO:0034388; C:Pwp2p-containing subcomplex of 90S preribosome; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0030515; F:snoRNA binding; IPI:SGD.
GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.
527P42935    788   ELP2_YEAST Elongator complex protein 2 OS=Sac...685     32.7     26     47GO:0005737; C:cytoplasm; IDA:SGD.::GO:0033588; C:Elongator holoenzyme complex; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0032447; P:protein urmylation; IMP:SGD.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0002098; P:tRNA wobble uridine modification; IMP:SGD.
528Q54MZ3    499   CDC20_DICDI Anaphase-promoting complex subuni...2330.004     42     26     37GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0045335; C:phagocytic vesicle; IDA:dictyBase.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.
529O94967    919   WDR47_HUMAN WD repeat-containing protein 47 O...1760.005     42.4     24     43
530Q86JF2    4118   LVSB_DICDI BEACH domain-containing protein lv...780.005     42.4     38     47GO:0005768; C:endosome; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005764; C:lysosome; IDA:dictyBase.::GO:0045335; C:phagocytic vesicle; IDA:dictyBase.
GO:0005488; F:binding; IEA:InterPro.
GO:0009267; P:cellular response to starvation; IMP:dictyBase.::GO:0031154; P:culmination involved in sorocarp development; IMP:dictyBase.::GO:0006887; P:exocytosis; IMP:dictyBase.::GO:0007041; P:lysosomal transport; IMP:dictyBase.::GO:0007040; P:lysosome organization; IMP:dictyBase.::GO:0001845; P:phagolysosome assembly; IMP:dictyBase.::GO:0006970; P:response to osmotic stress; IMP:dictyBase.
531Q9Y297    605   FBW1A_HUMAN F-box/WD repeat-containing protei...821.9     33.9     29     50GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0019005; C:SCF ubiquitin ligase complex; IDA:UniProtKB.
GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO:0031145; P:anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process; TAS:Reactome.::GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0043433; P:negative regulation of sequence-specific DNA binding transcription factor activity; TAS:BHF-UCL.::GO:0045879; P:negative regulation of smoothened signaling pathway; TAS:BHF-UCL.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IMP:UniProtKB.::GO:0045862; P:positive regulation of proteolysis; IMP:UniProtKB.::GO:0051437; P:positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle; TAS:Reactome.::GO:0031648; P:protein destabilization; IMP:UniProtKB.::GO:0016032; P:viral reproduction; TAS:Reactome.::GO:0016055; P:Wnt receptor signaling pathway; IEA:UniProtKB-KW.
532O42249    317   GBLP_ORENI Guanine nucleotide-binding protein...2470.005     41.6     25     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0030178; P:negative regulation of Wnt receptor signaling pathway; ISS:UniProtKB.::GO:2000543; P:positive regulation of gastrulation; ISS:UniProtKB.::GO:0051302; P:regulation of cell division; ISS:UniProtKB.::GO:2000114; P:regulation of establishment of cell polarity; ISS:UniProtKB.::GO:0032880; P:regulation of protein localization; ISS:UniProtKB.
533P62882    353   GBB5_RAT Guanine nucleotide-binding protein s...2760.34     35.8     23     36GO:0005834; C:heterotrimeric G-protein complex; TAS:RGD.
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
GO:0007186; P:G-protein coupled receptor signaling pathway; TAS:RGD.
534Q8L3Z8    483   FZR2_ARATH Protein FIZZY-RELATED 2 OS=Arabido...1920.005     42     23     45
GO:0005515; F:protein binding; IPI:TAIR.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0016049; P:cell growth; IMP:TAIR.::GO:0042023; P:DNA endoreduplication; IMP:TAIR.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0010091; P:trichome branching; IMP:TAIR.
535Q920M5    471   CORO6_MOUSE Coronin-6 OS=Mus musculus (Mouse)...1138.6     31.6     30     46GO:0015629; C:actin cytoskeleton; IBA:RefGenome.
GO:0051015; F:actin filament binding; IBA:RefGenome.
GO:0030036; P:actin cytoskeleton organization; IBA:RefGenome.
536Q7RY68    660   PFS2_NEUCR Polyadenylation factor subunit 2 O...1332.4     33.5     25     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
537O43071    558   PRP17_SCHPO Pre-mRNA-processing factor 17 OS=...690.5     35.4     36     55GO:0005681; C:spliceosomal complex; ISS:PomBase.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
538Q54LT8    293   STRAP_DICDI Serine-threonine kinase receptor-...2320.005     41.2     22     44
GO:0004872; F:receptor activity; ISS:dictyBase.
GO:0030512; P:negative regulation of transforming growth factor beta receptor signaling pathway; ISS:dictyBase.
539Q9CAA0    920   COB21_ARATH Coatomer subunit beta'-1 OS=Arabi...1780.005     42     28     41GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; IDA:TAIR.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
540P62881    395   GBB5_MOUSE Guanine nucleotide-binding protein...2760.21     36.6     23     36GO:0005634; C:nucleus; IDA:MGI.::GO:0005886; C:plasma membrane; IDA:MGI.
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
GO:0007186; P:G-protein coupled receptor signaling pathway; IDA:MGI.
541Q5RDY7    353   GBB5_PONAB Guanine nucleotide-binding protein...2760.38     35.8     22     36
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
records
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