Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR208W
Length:
297
Number of sequences:
5887
Description:
YLR208W SEC13 SGDID:S000004198, Chr XII from 559551-560444, Genome Release 64-1-1, Verified ORF, "Component of the Nup84 nuclear pore sub-complex, the Sec13p-Sec31p complex of the COPII vesicle coat, and the SEA (Seh1-associated) complex; required for vesicle formation in ER to Golgi transport and nuclear pore complex organization; the Nup84 subcomplex has a role in transcription elongation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
271B4LS78    419   WDR12_DROVI Ribosome biogenesis protein WDR12...3380.000002     52.4     26     41GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0070545; C:PeBoW complex; ISS:UniProtKB.
GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:UniProtKB.
272O61585    690   KTNB1_STRPU Katanin p80 WD40-containing subun...1156     32.3     27     47GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.
273Q6BIR9    394   CIAO1_DEBHA Probable cytosolic iron-sulfur pr...1981.6     33.9     26     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
274Q8TC44    478   POC1B_HUMAN POC1 centriolar protein homolog B...2240.009     41.2     24     37GO:0005814; C:centriole; IDA:UniProtKB.::GO:0005932; C:microtubule basal body; IDA:UniProtKB.
GO:0042384; P:cilium assembly; IMP:UniProtKB.
275Q4WEI5    436   HAT2_ASPFU Histone acetyltransferase type B s...590.058     38.5     41     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
276Q9VZF4    1326   FBXW7_DROME F-box/WD repeat-containing protei...2690.000003     52.4     25     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0019005; C:SCF ubiquitin ligase complex; NAS:FlyBase.
GO:0030332; F:cyclin binding; TAS:FlyBase.
GO:0007411; P:axon guidance; IMP:FlyBase.::GO:0008054; P:cyclin catabolic process; TAS:FlyBase.::GO:0042023; P:DNA endoreduplication; IMP:FlyBase.::GO:0060253; P:negative regulation of glial cell proliferation; IGI:FlyBase.::GO:0045926; P:negative regulation of growth; IMP:FlyBase.::GO:0007096; P:regulation of exit from mitosis; TAS:FlyBase.::GO:0007088; P:regulation of mitosis; IMP:FlyBase.::GO:0030162; P:regulation of proteolysis; TAS:FlyBase.
277Q8K450    639   SPG16_MOUSE Sperm-associated antigen 16 prote...1041.1     34.7     30     44GO:0035085; C:cilium axoneme; IDA:UniProtKB.::GO:0035086; C:flagellar axoneme; IDA:MGI.::GO:0005874; C:microtubule; IDA:MGI.::GO:0005634; C:nucleus; IDA:MGI.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0019901; F:protein kinase binding; IPI:UniProtKB.
GO:0042384; P:cilium assembly; IDA:UniProtKB.::GO:0007283; P:spermatogenesis; IMP:MGI.
278Q9FUY2    931   LEUNG_ARATH Transcriptional corepressor LEUNI...733.3     33.1     27     51GO:0005634; C:nucleus; IDA:TAIR.
GO:0046982; F:protein heterodimerization activity; IPI:TAIR.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0009908; P:flower development; IMP:TAIR.::GO:0080001; P:mucilage extrusion from seed coat; IMP:TAIR.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
279Q0USG2    443   CIAO1_PHANO Probable cytosolic iron-sulfur pr...1150.71     35     25     45
280Q05AM5    821   ELP2_DANRE Elongator complex protein 2 OS=Dan...969.5     31.6     26     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0000502; C:proteasome complex; ISS:UniProtKB.
GO:0061133; F:endopeptidase activator activity; ISS:UniProtKB.
GO:0043248; P:proteasome assembly; ISS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; ISS:UniProtKB.
281Q6IA86    826   ELP2_HUMAN Elongator complex protein 2 OS=Hom...892.8     33.5     26     42GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IC:HGNC.::GO:0005794; C:Golgi apparatus; IDA:HPA.::GO:0005730; C:nucleolus; IC:HGNC.::GO:0008023; C:transcription elongation factor complex; IDA:HGNC.
GO:0006357; P:regulation of transcription from RNA polymerase II promoter; TAS:HGNC.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; IC:HGNC.
282Q5NVK4    489   COR1B_PONAB Coronin-1B OS=Pongo abelii (Sumat...1090.006     41.6     27     45GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.
283Q9CWU9    326   NUP37_MOUSE Nucleoporin Nup37 OS=Mus musculus...1080.32     35.8     30     44GO:0000777; C:condensed chromosome kinetochore; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.
284Q91WG4    831   ELP2_MOUSE Elongator complex protein 2 OS=Mus...2590.013     40.8     22     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0000502; C:proteasome complex; ISS:UniProtKB.
GO:0061133; F:endopeptidase activator activity; ISS:UniProtKB.::GO:0019901; F:protein kinase binding; IDA:MGI.
GO:0043248; P:proteasome assembly; ISS:UniProtKB.::GO:0046425; P:regulation of JAK-STAT cascade; IDA:MGI.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; ISS:UniProtKB.
285Q9BR76    489   COR1B_HUMAN Coronin-1B OS=Homo sapiens (Human...1110.008     41.2     26     44GO:0015629; C:actin cytoskeleton; IBA:RefGenome.::GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
GO:0051015; F:actin filament binding; IBA:RefGenome.
GO:0030036; P:actin cytoskeleton organization; IBA:RefGenome.
286Q9C1X0    297   YN55_SCHPO Uncharacterized WD repeat-containi...1310.000004     51.2     30     49GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.::GO:0043234; C:protein complex; NAS:PomBase.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
287P90648    732   MHCKB_DICDI Myosin heavy chain kinase B OS=Di...2580.000004     51.6     23     41GO:0005826; C:actomyosin contractile ring; IDA:dictyBase.
GO:0005524; F:ATP binding; IC:dictyBase.::GO:0016905; F:myosin heavy chain kinase activity; IDA:dictyBase.::GO:0045159; F:myosin II binding; IPI:dictyBase.
GO:0000910; P:cytokinesis; IMP:dictyBase.::GO:0031037; P:myosin II filament disassembly; IMP:dictyBase.::GO:0018107; P:peptidyl-threonine phosphorylation; IDA:dictyBase.::GO:0046777; P:protein autophosphorylation; IDA:dictyBase.
288Q1DR81    473   CIAO1_COCIM Probable cytosolic iron-sulfur pr...3080.0008     44.3     22     37
289Q8SRK1    384   HAT2_ENCCU Histone acetyltransferase type B s...2010.0005     44.7     23     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.
290Q0CCS0    422   CIAO1_ASPTN Probable cytosolic iron-sulfur pr...1343.2     33.1     25     41
291Q4P5F5    455   CIAO1_USTMA Probable cytosolic iron-sulfur pr...2940.002     42.7     26     40
292Q8WWQ0    1821   PHIP_HUMAN PH-interacting protein OS=Homo sap...707.9     32     30     51GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0005158; F:insulin receptor binding; NAS:UniProtKB.
GO:0007010; P:cytoskeleton organization; IMP:UniProtKB.::GO:0008286; P:insulin receptor signaling pathway; NAS:UniProtKB.::GO:0043066; P:negative regulation of apoptotic process; ISS:UniProtKB.::GO:0008284; P:positive regulation of cell proliferation; ISS:UniProtKB.::GO:0043568; P:positive regulation of insulin-like growth factor receptor signaling pathway; ISS:UniProtKB.::GO:0045840; P:positive regulation of mitosis; ISS:UniProtKB.::GO:0022604; P:regulation of cell morphogenesis; IMP:UniProtKB.
293Q2UPI0    438   CIAO1_ASPOR Probable cytosolic iron-sulfur pr...1651.7     33.9     24     38
294B8MWR8    438   CIAO1_ASPFN Probable cytosolic iron-sulfur pr...1651.7     33.9     24     38
295A1CQL6    453   CIAO1_ASPCL Probable cytosolic iron-sulfur pr...2830.00003     48.9     24     40
296P16649    713   TUP1_YEAST General transcriptional corepresso...2850.000006     51.2     28     41GO:0017053; C:transcriptional repressor complex; IDA:SGD.
GO:0042393; F:histone binding; IDA:SGD.::GO:0042826; F:histone deacetylase binding; IDA:SGD.::GO:0036033; F:mediator complex binding; IDA:SGD.::GO:0080025; F:phosphatidylinositol-3,5-bisphosphate binding; IDA:SGD.::GO:0001191; F:RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription; IDA:SGD.::GO:0043130; F:ubiquitin binding; IDA:SGD.
GO:0043486; P:histone exchange; IMP:SGD.::GO:0035955; P:negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:0001198; P:negative regulation of mating-type specific transcription from RNA polymerase II promoter; IMP:SGD.::GO:0000433; P:negative regulation of transcription from RNA polymerase II promoter by glucose; IMP:SGD.::GO:0007070; P:negative regulation of transcription from RNA polymerase II promoter during mitosis; IMP:SGD.::GO:0016584; P:nucleosome positioning; IDA:SGD.::GO:2000531; P:regulation of fatty acid biosynthetic process by regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:2001020; P:regulation of response to DNA damage stimulus; IMP:SGD.::GO:0061418; P:regulation of transcription from RNA polymerase II promoter in response to hypoxia; IMP:SGD.::GO:0061392; P:regulation of transcription from RNA polymerase II promoter in response to osmotic stress; IMP:SGD.
297Q9BQ67    446   GRWD1_HUMAN Glutamate-rich WD repeat-containi...2194.7     32.3     22     35GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005730; C:nucleolus; IDA:HPA.
298Q9BQ87    522   TBL1Y_HUMAN F-box-like/WD repeat-containing p...1562.5     33.5     27     40GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
299Q9WUM3    484   COR1B_MOUSE Coronin-1B OS=Mus musculus (Mouse...1110.034     39.3     25     43GO:0015629; C:actin cytoskeleton; IBA:RefGenome.::GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
GO:0051015; F:actin filament binding; IBA:RefGenome.
GO:0030036; P:actin cytoskeleton organization; IBA:RefGenome.
300O89046    484   COR1B_RAT Coronin-1B OS=Rattus norvegicus (Ra...1090.018     40     26     44GO:0015629; C:actin cytoskeleton; IBA:RefGenome.::GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
GO:0051015; F:actin filament binding; IBA:RefGenome.
GO:0030036; P:actin cytoskeleton organization; IBA:RefGenome.
301Q93847    395   YZLL_CAEEL Uncharacterized WD repeat-containi...2880.8     34.7     24     41
records
Previous ‹‹ ›› Next Total records: 1000 271 - 300
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::